Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00970 ATGGGTCTTAGAGGAAGCATCCCCACAGAAATAGGGACACTTACAAAACTTACCATTATTGAATTGTCTAACAATAGTCTCCAAGGTTCAATTCCTCCTACTTTGGGTCAATTAGAGAATTTGACGGATATATACTTTCAATATAACAATATTACTGGTTCAATACCAATAGAATTTGGAAATTTGAAAAGTTTACAAAGACTATATCTCTCAAATAATTTCCTTAACGGTTCAATCCCTCCTACTTTAGGTCGTTTGGGGAATTTGATACATCTCTTCCTTGATTTTAACCAAATAGAAGGCCACATACCCGAAGAATTAGGGAATTTGTCCAGATTACAAGTTTTGCGACTTAATCATAATAAGATTTCAGGTTTAATACCTCCAAAACTTTTGCAAATGGACAAAATCTCCTCTTTATATCTGTCATCAAATCAATTATGTGGTTCAATCCCCTTAGAAACCATGAAATGTCCTTATGCTGAAATAGTTGATTTAAGCTATAACTTGTTTAATGGAAGCATAACTTCTCAAATTGGTTGTGTCAAAGACCTTAGTCTTAGTCACAATTTTCTTGTTGGTGACATTCCATTTCTTTTGAAAATAAACTGGGTACTTGATCGCTTGGATCTTAGTTATAATAATTTTTCGGGTAAAGTACACAAGGAACTTGCTAGTCTATCATATATAAATCTTTCATACAATTCTTTTGACTTCTCACAGGACCTTGACTTAGAGGTACCAGATTACTGTTCTTTTCACGTAGACTCATTAATTGATGATCCCCATATGCCCAATTTCACAGATTGCCACTTGTTCAACCAAACGAATCCTCAAACTACAAAAAGAAAGTCCATGATCATCTTAATTGTTCTTCTTATCATTTTCTTCGGTCTGTTAGTACTCCTTCTAATATTATATTTCTCAAGATGTATTTTTAAGAAAAAATGTGAAGGAATATCAACAAAGAATGGAGACTTGTTTTCCATATGGAACTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACAGAAGATTTTGACCTCAAGTATTGTATTGGGGCAGGCGCATATGGAAGTGTCTATAAAGCACAATTGCCTAGTGGCAACATTGTTGCATTAAAAAAGCTTCACCGTATGGAATCTCAAAATCCATCATTTGACAAAAGTTTTCGAAATGAGGTGAAGATGTTAACAGAAATTCGTCATAAAAACATTGTAAAGCTTCATGGCTTTTGCCTCCACAATCAGTGCATGTTTTTGGTCTATCAATACATGGAAAGGGGTAGTTTATTTTATATTTTGAATAATGATGTGGAAGCTGAGGAGTTGAATTGGAGTAAGAGGGTGAATGTCATTAAAGGGGTAGCACATGCTTTATCTTACATGCATCATGATTGTGCCCCACCAATTGTTCATCGAGATGTAACAAGTAGCAATGTCTTGTTAAACTCACAGTTAGAGGCTTATGTCTCAGACTTTGGCACAGCTAGACTCCTCGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGCACTTATGGCTACATTGCTCCAGAGCTTGCTTATACATTGAGCGTGACAGAAAAGTGTGATGTTTATAGTTTTGGGGTGGTGACTTTGGAAACATTAATGGGAAAACATCCCGGAGAGTTAATCTCATCTTTATCAAACTCAACTACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTTCCTCTTCCTTTTCAAAAAGATGCTCAAGATATAAATCTTGTGGTGACAATAGCATTATCATGTGTGTGCTCCAAACCAAACTTAAGGCCATCAATTCAACAAGTGGCTGAGAAACTCTCTAGTTTCAAAATAATTGATGGAAGAGAAGCCTCCAACTATAGTATTGATGACTTCCTTTGGCAGTCCGGTTTGACTCCTTTCTTGGTCATTCGGCCTATGCTCGGGCGTCCTCAATCTTTATCGGTGGCTGCCTTGATGTCTTCTTGGCTCTCGTTGATCGTTATCTCCTCTCCGAATTTGGACGTGCCTGATTTCAACCAAAAGGTCGAGCTATTGTTGGATACCATTTTCAGCCTGTTGGGATCTCAGTTCCTTACAGTACAAAGAGGTTAG 2121 0.3668 MGLRGSIPTEIGTLTKLTIIELSNNSLQGSIPPTLGQLENLTDIYFQYNNITGSIPIEFGNLKSLQRLYLSNNFLNGSIPPTLGRLGNLIHLFLDFNQIEGHIPEELGNLSRLQVLRLNHNKISGLIPPKLLQMDKISSLYLSSNQLCGSIPLETMKCPYAEIVDLSYNLFNGSITSQIGCVKDLSLSHNFLVGDIPFLLKINWVLDRLDLSYNNFSGKVHKELASLSYINLSYNSFDFSQDLDLEVPDYCSFHVDSLIDDPHMPNFTDCHLFNQTNPQTTKRKSMIILIVLLIIFFGLLVLLLILYFSRCIFKKKCEGISTKNGDLFSIWNYDGKIAFEDIIEATEDFDLKYCIGAGAYGSVYKAQLPSGNIVALKKLHRMESQNPSFDKSFRNEVKMLTEIRHKNIVKLHGFCLHNQCMFLVYQYMERGSLFYILNNDVEAEELNWSKRVNVIKGVAHALSYMHHDCAPPIVHRDVTSSNVLLNSQLEAYVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLSVTEKCDVYSFGVVTLETLMGKHPGELISSLSNSTTQNMLVKDLLDSRLPLPFQKDAQDINLVVTIALSCVCSKPNLRPSIQQVAEKLSSFKIIDGREASNYSIDDFLWQSGLTPFLVIRPMLGRPQSLSVAALMSSWLSLIVISSPNLDVPDFNQKVELLLDTIFSLLGSQFLTVQRG 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00970 706 Gene3D Transferase(Phosphotransferase) domain 1 428 631 - -
Phco1g00970 706 FunFam Leucine-rich repeat receptor protein kinase MSP1 313 427 - -
Phco1g00970 706 ProSiteProfiles Protein kinase domain profile. 349 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00970 706 Pfam Leucine rich repeat 16 73 IPR001611 GO:0005515
Phco1g00970 706 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Phco1g00970 706 PANTHER LEUCINE RICH REPEAT KINASE 2 3 619 - -
Phco1g00970 706 FunFam MDIS1-interacting receptor like kinase 2 428 620 - -
Phco1g00970 706 Pfam Protein kinase domain 354 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00970 706 SMART LRR_typ_2 62 86 IPR003591 -
Phco1g00970 706 SMART LRR_typ_2 110 134 IPR003591 -
Phco1g00970 706 SMART LRR_typ_2 14 38 IPR003591 -
Phco1g00970 706 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Phco1g00970 706 ProSitePatterns Tyrosine protein kinases specific active-site signature. 473 485 IPR008266 GO:0004672|GO:0006468
Phco1g00970 706 SUPERFAMILY Protein kinase-like (PK-like) 335 615 IPR011009 -
Phco1g00970 706 SUPERFAMILY L domain-like 2 237 - -
Phco1g00970 706 Gene3D Ribonuclease Inhibitor 1 253 IPR032675 -
Phco1g00970 706 Gene3D Phosphorylase Kinase; domain 1 314 427 - -
Phco1g00970 706 FunFam Leucine-rich repeat receptor protein kinase EMS1 2 80 - -
Phco1g00970 706 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 81 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00970 Phco-Chr1 9988515 9994970 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco1g00970 Pkinase 4.2e-46 CL0016