Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00951 | ATGGAGAAGAAGGCCATCACCTACGCTACAAGTTCCAGAGCCTCCACCGCGCCGCCACCTCCGCCGCCGCGAGGAAGAGGAGGCAGTGACGTCGTAGAAAGACTAGTCTCCGCCGCGATCAATGAAGCCATTCCCTCCATCGCTTTAAATTTACAGATCCAAGGGGGAATCACCGAAGAGAGGTTGCGCATTCCATTCCTCTGTCTTCTAATTGCTGTTCCTCACCAGGATGATAGTGATTTTGATTATTGTTTCGGGTTGTGTTGTAATAAACTGTCCTCGTCTCATATGTCTAGGGCTTGGGGCTCAATTTATTCTGACCAACCTGCCAAGTCTGCTGAAAACCAGCAAACTGACCAAGTTTGTAGTTTTTTCAGAAAACCGATAAATAAAAAGAATATAAGGAAACGGACTATTGGTGATGAAGATAATGAGGAGGACTCTAACAAAGAAACTTCTCTGTTGCATATTCAAAAGAAAACCTTAAAGCCTGACAATAAGTTGTACTTTTCCACTGGCTCTTCAAAAAGTTCTGTATCTGCTGAACCAAGTGAAGAGTCAGGAAAACCAGTCTTTCAATTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACGGCAACTCTGGAGACTGAGACTGAGTTCTCGAAAGATGCCCGTGCCATCCGTGAAAGAGCTCTCAGGCAAGCATCAGAGAGTCTGAAAGGGAAAAGTGCAAGGTCTGAGGATGAAAAATTATATAAGGGGATGAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGAGAACAAACAATTGCTAGTGAAAAAGCTGGTGGAGCACATGGTCCTCTTAGGGCTTCTGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGACTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGCAGGTGAGGAGGAGGGTGCTAATTTGACTGATGAAGATGATGAGGATTCGTTACCTTTTGCATGTTTCATCTGTAGAAACCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAGGATGGCCGAGGAAAAATAA | 1296 | 0.4383 | MEKKAITYATSSRASTAPPPPPPRGRGGSDVVERLVSAAINEAIPSIALNLQIQGGITEERLRIPFLCLLIAVPHQDDSDFDYCFGLCCNKLSSSHMSRAWGSIYSDQPAKSAENQQTDQVCSFFRKPINKKNIRKRTIGDEDNEEDSNKETSLLHIQKKTLKPDNKLYFSTGSSKSSVSAEPSEESGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAIRERALRQASESLKGKSARSEDEKLYKGMNSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARKMRLAAGEDAGEEEGANLTDEDDEDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRRMAEEK | 431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00951 | 431 | MobiDBLite | consensus disorder prediction | 135 | 157 | - | - | |
| Phco1g00951 | 431 | FunFam | RING finger protein 113A | 370 | 429 | - | - | |
| Phco1g00951 | 431 | SUPERFAMILY | RING/U-box | 371 | 414 | - | - | |
| Phco1g00951 | 431 | Gene3D | - | 292 | 326 | - | - | |
| Phco1g00951 | 431 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Phco1g00951 | 431 | CDD | RING-HC_RNF113A_B | 365 | 418 | - | - | |
| Phco1g00951 | 431 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 295 | 320 | IPR000571 | GO:0046872 | |
| Phco1g00951 | 431 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 370 | 429 | IPR013083 | - | |
| Phco1g00951 | 431 | PANTHER | ZINC FINGER PROTEIN 183 | 117 | 431 | IPR039971 | - | |
| Phco1g00951 | 431 | FunFam | Zinc finger CCCH domain-containing protein 1 | 292 | 326 | - | - | |
| Phco1g00951 | 431 | ProSiteProfiles | Zinc finger RING-type profile. | 372 | 410 | IPR001841 | - | |
| Phco1g00951 | 431 | SUPERFAMILY | CCCH zinc finger | 293 | 325 | IPR036855 | GO:0046872 | |
| Phco1g00951 | 431 | SMART | ring_2 | 372 | 409 | IPR001841 | - | |
| Phco1g00951 | 431 | ProSitePatterns | Zinc finger RING-type signature. | 387 | 396 | IPR017907 | - | |
| Phco1g00951 | 431 | ProSiteProfiles | Zinc finger C3H1-type profile. | 294 | 322 | IPR000571 | GO:0046872 | |
| Phco1g00951 | 431 | Pfam | Zinc finger, C3HC4 type (RING finger) | 371 | 413 | - | - | |
| Phco1g00951 | 431 | SMART | c3hfinal6 | 294 | 321 | IPR000571 | GO:0046872 |
Transcription factors information