Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00948 ATGGCCAAGCAGAAGCAAGTTCTTCCCAGCCCCTTACCGCCGAGCGCCGCCGTCAAACTACAACGAAGCTCCCTGCCGCCGCCTACCATTCCACCAAAATCTGCTGCACGTGACACACTCACACGTCATTGTAGGGAAGCACTGGTTTCTGAGCATAGCAAAATGGAAACTTGGGAAAGCTCTGGAGATGTTACTGAAATCAATTCTCAAAGTTTGGGAGATGGTGATAGTAATGCATTTATTTTGCCTGCAAAGAGGATGAAGAAAAAGAAAGGGAAGGAACAGCATCATGGAAAAGGTCAATCAAATAAGAAACAGAAATTGAGCAAACCTCAGAAGAGGAAGAGGAAGTTTGAGGATGACAGGGATAAACAACTTCTGCAGGAAAAAGCTATTAAGACAATGAACGAGAACACACTTCCAGAGTATGCATATCATCTTTTGCAGTCCTCATGCAATATAAATCGGAACGAGACTATGAAGGAAAAGCGTAGGAGGACTGTTCATTTATTGAAAGAAGGATTGAAGGTTTCATATAATGGGTTGTCTAAGAAACCTCTGATGGACGAGATTCATTTAGCACAAGATGATGAAGTCGAAGAAAATGACATTCAAATTCAACCCATTAGATCTGAAGAAGTCTTAAATACAACCTCGACATCTTTGGAGTCCTCTGAAGAACTGGTTCATGGCAATGAGGTTGAAGATTATAAATGTGTTTCTGAAAATCCTGCTGATATTTCCACTGTCAAACAACTTTATGAAATCAGAAGTTCTCCGTTGTCTTGTTCGATTGATGAAATAGAAATCTCCAATTTAAAGGATAGAACAGATCAGAATCATAACTCCAATGAATTGAACAACCTTCTTGATTCTTCTGCACCAAGGCCTTCAAATGTTCCTACTGTTGTGCATGTGTATAGACCAAGTGAAGTTGAAGACAAAAGAAAGGATTTGCCTATAGTTATGATGGAGCAAGAGATAATGGAAGCTATAAATGACTGTTCTAGTGTTATCATATGTGGAGAAACTGGATGTGGTAAAACAACTCAAGTTCCTCAGTTTCTTTATGAAGCTGGTTACGGTTCAAGTAAGGGTATCATTGGTGTTACTCAACCACGTCGAGTGGCTGTTCTTGCAACAGCCAAGCGTGTGGCATATGAGCTTGGGCTTCATTTAGGGAAGGGGGTTGGTTTTCAAGTCAGATACGACAAGAAGATTGGTGAAAATTGTTCTATCAAGTTTATGACTGATGGAATTTTGCTACGAGAAGTTCAGAATGATATTTTGTTGAGACGTTATTCTGTCATAATTCTTGATGAGGCCCATGAGAGGAGCTTGAACACGGACATTTTGATCGGGATGCTCTCACGTGTAATTAAAACTCGCCAAATGATTTATAATGAACAACAGAAGATGATACTTTCAGGAGAAATTATAAGTCCTGAAAAAATGATTTTTCCATTAAAACTTGTGCTTATGAGTGCTACCTTGCGAGTACAAGACTTCACTTCTGGGAAGTTATTCCATACTGCTCCACCTGTGATAGAAGTTCCTACGAGGCAATTTCCAGTAGCAGTATACTTCTCAAAGAAAACAGAGAAAACAGATTACATTGGAGAAGCTTATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCGCCTGGGGGCATACTCGTCTTTGTTACTGGGCAAAGGGAAGTAGAGGACTTGTGCAGGAAATTACGGAAAGCATCAAGGGAGTTTATCAAGAAAAAAGTTGAAGGGTCTGTGCAAACTGCTAGCACTGTGATCAATGAAACAAACTCTGTTGAGGGAGTAAATATTAGCGAGATCAATGAAGCATTTGAGGTTCATGGAAGTTCATCCATCCAGCAAACTGATAGATTTAGTGGTTATGATGAAGATGAGGACAATGCAAATGAGAATGAATCTGATTTTTCTTATGACACTGAAACAGAGAGTGAACTGGAATTTGATGATGATAATCTTGAGCTTCCGGAGAACAATAGTAATATTGTGGATGCCTTAGGACAGGCGGGAAGTCTTGCTTCACTAAAGGCTGCTTTTGAAAAATTGTCTTGGCAAGCCGCATTAAGCTCCTCAAATGAACAGAAGACATTTCTTGCTAACACAGAAGGTAATTTAGACCAATCAAAAGTTCTCAGGGAGAAAAAAACAAAAGAAAATTGCAGTCCTCCAGGTGCACTCTGTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTTCGTGTATTTGAAGAAGTTGGGGAGGGAGAGCGGCTTGTAGTTGTTGCAACAAATGTTGCTGAAACATCTTTAACTATCCCAGGGATAAAGTATGTGGTTGATACTGGAAGAGAAAAGGTGAAGAATTATGACCCCTCTAATGGCATGGAGACATACGAAATACAATGGATAAGTAAGGCATCTGCTGCACAGCGTGCAGGAAGATCTGGAAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCGGCAGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCAGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTGAAATTCATGCATATTAAAAAGGTTGCAAACTTCCCATTTCCTACTTCTCTTAAAGCTGCTTCTTTGCTCGAAGCTGAAAATTGCTTGAAATCTCTTGAAGCACTTGATAGCAAGGATGAACTTACGCTGTTGGGAAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTCCTTACTGTTATTAAAAATACGAGACATGAGCTCAAACGTAATTCAAATTTGCTTTTGGCATATGCTGTTGCAGCTGCTGCAGCGTTAAGCTTGTCAAATCCTTTTATAATGCAATATGAAGATGATAACAGCAGAGATTCAAATATGTCTGAGAAATCTAGAATGGGAGATGGTGAGAAAGACTTTGATAAAAAGGGAAAGTCAAGCAGAAAGAAACTAAAAGCAACAGCGAAAGTTGCCCGTGAGAAATTTCGAGTTGTCACAAGTGATGCCCTCACCATAGCTTATGCTTTACAGTGTTTTGAACATTCACAGAAATCAGTAGAATTCTGTGATGACTATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGGCAACAGCTACTTAAACTGGTCTTTTATCAGAGTGATAAAGGTGGTCTTGAAGAAGAGTACTCATGGATCCATGGAACATTAGAGGATGTTGAGTGTGCATGGCAGGTTTCTTCTGAAAAGTATCCACTTTCTCTTGTTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTTCATCTTTCTCTAGGGCCTCCGATGGAGAGAAAACCTCCCGTGCTTTAAGGTATCAATCATGCATGGTTGATGAGAGTGTTTTACTTCATCGTTGGTCATCACTTTCCACTGTAGGCCCTGAGTATGTGGTGTACAATGAACTATTAGAGACCAAAAGACCAAATAAAGAAGAGATAACAAGTACCAAGAGAGCATATATGCATGGAGTAACAAGTGTTGAGCCAGCTTGGCTTGTTGAGCATGCAAAGTCTTCATGCGTCTTCTCTAGTCCCCTGAAGGATCCTAGACCTTATTATGATGCTCTGACTGACCAAGTAAAATGTTGGGTAACCCCAACCTTTGGCCGTTTCTCTTGGAAGCTTCCAATGCATTCATTGCCAATTAGCAATGCTGAAGATCGGGTGCAAGTGTTTGCCTATGCTCTGCTTGAAGGCCAGGTGTGTCCCTGTTTAAGATCTGTTCGAAAATATATGTCAGCTCCCCCTGAAAGTATCATGAAGAAAGAAGCATTTGGTCAGAAAAGGGTCGGAAATCTTTTAAGCAAGTTAAAAAGCAGGTTGATTGATACCTCTGCTGTGCTAAGAATGGTGTGGAAGGAGAATCCAAGGGAACTTTTTTCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCACCAGCACTTCGAAGCTTTATGGTCAGAAATGCTTAAGGAACTGCTTATGGAGACCCAAGAAGGCCCTCAGCATAAAAGTTCTAGAAAAAAGAAAGTAAAATCTAAAGCACTATCATAA 4125 0.4058 MAKQKQVLPSPLPPSAAVKLQRSSLPPPTIPPKSAARDTLTRHCREALVSEHSKMETWESSGDVTEINSQSLGDGDSNAFILPAKRMKKKKGKEQHHGKGQSNKKQKLSKPQKRKRKFEDDRDKQLLQEKAIKTMNENTLPEYAYHLLQSSCNINRNETMKEKRRRTVHLLKEGLKVSYNGLSKKPLMDEIHLAQDDEVEENDIQIQPIRSEEVLNTTSTSLESSEELVHGNEVEDYKCVSENPADISTVKQLYEIRSSPLSCSIDEIEISNLKDRTDQNHNSNELNNLLDSSAPRPSNVPTVVHVYRPSEVEDKRKDLPIVMMEQEIMEAINDCSSVIICGETGCGKTTQVPQFLYEAGYGSSKGIIGVTQPRRVAVLATAKRVAYELGLHLGKGVGFQVRYDKKIGENCSIKFMTDGILLREVQNDILLRRYSVIILDEAHERSLNTDILIGMLSRVIKTRQMIYNEQQKMILSGEIISPEKMIFPLKLVLMSATLRVQDFTSGKLFHTAPPVIEVPTRQFPVAVYFSKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFIKKKVEGSVQTASTVINETNSVEGVNISEINEAFEVHGSSSIQQTDRFSGYDEDEDNANENESDFSYDTETESELEFDDDNLELPENNSNIVDALGQAGSLASLKAAFEKLSWQAALSSSNEQKTFLANTEGNLDQSKVLREKKTKENCSPPGALCVLPLYAMLPAAAQLRVFEEVGEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEIQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKFMHIKKVANFPFPTSLKAASLLEAENCLKSLEALDSKDELTLLGKAMAHYPLSPRHSRMLLTVIKNTRHELKRNSNLLLAYAVAAAAALSLSNPFIMQYEDDNSRDSNMSEKSRMGDGEKDFDKKGKSSRKKLKATAKVAREKFRVVTSDALTIAYALQCFEHSQKSVEFCDDYALHFKTMDEMSKLRQQLLKLVFYQSDKGGLEEEYSWIHGTLEDVECAWQVSSEKYPLSLVEERLICQAICAGWADRVAKRISSFSRASDGEKTSRALRYQSCMVDESVLLHRWSSLSTVGPEYVVYNELLETKRPNKEEITSTKRAYMHGVTSVEPAWLVEHAKSSCVFSSPLKDPRPYYDALTDQVKCWVTPTFGRFSWKLPMHSLPISNAEDRVQVFAYALLEGQVCPCLRSVRKYMSAPPESIMKKEAFGQKRVGNLLSKLKSRLIDTSAVLRMVWKENPRELFSEILDWFQQSFHQHFEALWSEMLKELLMETQEGPQHKSSRKKKVKSKALS 1374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00948 1374 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 435 444 IPR002464 -
Phco1g00948 1374 Gene3D - 876 981 - -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 967 991 - -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 84 112 - -
Phco1g00948 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 945 IPR027417 -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 637 652 - -
Phco1g00948 1374 Pfam Helicase associated domain (HA2) 887 1016 IPR007502 GO:0004386
Phco1g00948 1374 MobiDBLite consensus disorder prediction 276 297 - -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 620 652 - -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 282 297 - -
Phco1g00948 1374 PANTHER ATP-DEPENDENT RNA HELICASE 238 1205 - -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 965 992 - -
Phco1g00948 1374 FunFam ATP-dependent RNA helicase DEAH13 522 627 - -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 60 76 - -
Phco1g00948 1374 SMART helicmild6 716 825 IPR001650 -
Phco1g00948 1374 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 685 866 IPR001650 -
Phco1g00948 1374 SMART ha2_5 886 1018 IPR007502 GO:0004386
Phco1g00948 1374 CDD DEXHc_DHX37 319 518 - -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 1354 1374 - -
Phco1g00948 1374 Gene3D - 266 521 IPR027417 -
Phco1g00948 1374 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1102 1201 IPR011709 -
Phco1g00948 1374 Pfam DEAD/DEAH box helicase 326 502 IPR011545 GO:0003676|GO:0005524
Phco1g00948 1374 MobiDBLite consensus disorder prediction 38 59 - -
Phco1g00948 1374 FunFam ATP-dependent RNA helicase DHX37/DHR1 275 521 - -
Phco1g00948 1374 Gene3D - 684 846 IPR027417 -
Phco1g00948 1374 Gene3D - 522 629 IPR027417 -
Phco1g00948 1374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 329 516 IPR014001 -
Phco1g00948 1374 SMART ultradead3 317 528 IPR014001 -
Phco1g00948 1374 FunFam ATP-dependent RNA helicase DEAH13 650 843 - -
Phco1g00948 1374 Pfam Helicase conserved C-terminal domain 703 825 IPR001650 -
Phco1g00948 1374 MobiDBLite consensus disorder prediction 1 124 - -
Phco1g00948 1374 FunFam ATP-dependent RNA helicase DEAH13 872 1002 - -
Phco1g00948 1374 CDD SF2_C_RHA 719 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00948 Phco-Chr1 9659551 9667952 Transposed