Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00939 ATGTTGCAACCCTTCACTACTTTCTTCACCTTTCTGCATAGTAAGACCAAATCCATCCTCAACCAACCAAGAATCATGATGAGTGCATGCTATAAAGGAAACCGAATCAAGAGAAAATTCTCTTCAGGTTCTGACTTGTCAATCTCTTCTTTCCTTCACATGGAGCTGTCCACTCAGTTTCATCAAGTTTTCAAGCTGATTGACTCTAATGGGGATGGGAAGATCTCAACCACTGAGCTGAGTGAAGTGCTTGCATGCCTTGGATACACCAAGTGCACTGCTGCTAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGAATGGCATGGAAAAAGAAGAGGAAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAAGATTGATAGTTACCTCATGGATGCTTTTCTCGTCTTTGATATTGACAAGAATGGCCTCATTTCAGCCAAGGAACTGCAGAGAGTTCTCTTCAATCTAGGGTGCGAAAACTGTAGTCTCAGAGAGTGCAAACGTATGATCAAAGGTGTTGATAAGAACGGAGATGGTTTTGTAGATTTTGAAGAATTTCGATCCATGATGCAAAGTGGACTTGCAAGTTAG 648 0.4198 MLQPFTTFFTFLHSKTKSILNQPRIMMSACYKGNRIKRKFSSGSDLSISSFLHMELSTQFHQVFKLIDSNGDGKISTTELSEVLACLGYTKCTAAKEAEGMVRVLDFNGDGFVDLDEFMVVMNGMEKEEEKEEEEEEEEEEDKIDSYLMDAFLVFDIDKNGLISAKELQRVLFNLGCENCSLRECKRMIKGVDKNGDGFVDFEEFRSMMQSGLAS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00939 215 ProSiteProfiles EF-hand calcium-binding domain profile. 180 215 IPR002048 GO:0005509
Phco1g00939 215 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Phco1g00939 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 146 210 - -
Phco1g00939 215 CDD EFh 147 210 IPR002048 GO:0005509
Phco1g00939 215 Gene3D - 8 146 - -
Phco1g00939 215 SUPERFAMILY EF-hand 51 211 IPR011992 -
Phco1g00939 215 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Phco1g00939 215 SMART efh_1 184 212 IPR002048 GO:0005509
Phco1g00939 215 SMART efh_1 59 87 IPR002048 GO:0005509
Phco1g00939 215 SMART efh_1 147 175 IPR002048 GO:0005509
Phco1g00939 215 SMART efh_1 97 125 IPR002048 GO:0005509
Phco1g00939 215 ProSitePatterns EF-hand calcium-binding domain. 193 205 IPR018247 -
Phco1g00939 215 Gene3D - 147 212 - -
Phco1g00939 215 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Phco1g00939 215 Coils Coil 115 150 - -
Phco1g00939 215 FunFam calmodulin-like protein 3 137 213 - -
Phco1g00939 215 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Phco1g00939 215 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Phco1g00939 215 CDD EFh 59 122 IPR002048 GO:0005509
Phco1g00939 215 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Phco1g00939 215 Pfam EF-hand domain pair 147 210 IPR002048 GO:0005509
Phco1g00939 215 Pfam EF-hand domain pair 59 122 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00939 Phco-Chr1 9491490 9492137 Transposed