Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00890 ATGAGTATTATCTTGTGGCTTTTCTTGCTACCTTTTTGCCTCTTAAACTTGAGCACCAACATCATTTTGGTAACTGGTCATTGTCTTGCCCATCAACAATCTTTGTTGCTCAATTTGAGAAACAATCTCGTATTCAATCCAACCAAGTCCAAAAAGCTTATTCATTGGAACCAAAGTGATGATTGTTGTGAATGGATTGGAGTGACATGCAACAAAGGCCATGTTATAGCTCTTGATCTGAGCCAAGAATCCATCTCTAGAGGTATTGATTATTTTAGTAGTCTCTTCAAGTTACAATATTTGCAGAGTTTGAATTTGGCCCATAATGATTTTCATTCTGAGATTCCTCAAGAGTTTAAAAAGCTAAAGAATTTAAGGCATTTGAATTTGTCAAATGCTGGATTTGAGGGGCAAATTCCAATTGAAATCTCTTACCTAACAAAGTTAGTAACTCTTGATTTGTCTAACACAGTTACTTCAAAACATGCTTTAAAACTTGAGAGACCAACTATTGAAATGCTTGTACAGAACTTCACACATATCAAAGAGTTACGTTTGGATGGTATTGCAATATCAGCCAAAGGAGAGGTGTGGAGTCATGTTTTATCTTCACTTACTAGCATGCAAGTGTTAAGTATGTCATCTTGTAATCTGTCTGGTCCTTTTGATTCTTCATTAGGAAAACTACAATCTCTCTTAATACTTCAATTGGACCACAACAATTTAGCATGTCTAGTTCCAGAGTCTTTGGGAAGTTTGTTTAATTTGACCACCTTGCAACTTAGTGGTTGTGGTTTGAGTGGAGTCTTTCCAAAAAATATCTTCCAAATACCATCATTGCAGGTGCTTGATCTGTCTGATAATCCAAATCTTCTTGGCTCTCTACCAAACTTTCCAAGTATAGGTTCCCTCTACAACTTCAACCTTAGTCATACAAATTTTTCTGGACCTTTGCCAGAGTCTCTTGACAATTTGAAGCAATTGTCTAAACTAGACCTATCAAATTGTCAGTTCAGAGGGACACTTCCTTGTTCCATGTCAAATTTGACCCAACTTGTTCATCTAGACTTGTCATACAATAACTTTACTGGTCATATTCCATCTTTTAATAGGTCCAAGGCCCTGGAAGTTTTATCCCTTAATCATAATCATTTTATGGGTACAATTCCATCTACCCATTTTGAGGGCCTTATAAATCTCAAGAGCATTGATTTAGGAGATAACTTCTTTGATGGAAGATTCCCCTCATCTTTATTCAAACTTCAATCTCTTCAAAGTCTCTTACTTTATTACAACAAATTTGATGGTGTGTTGGATGAATTTCCAAATGCTTCTTTGTCATTATTAGAGATGCTTCATTTGAGTGGCAACAACTTTGAAGGGCTCATTCCTATGTCTATCTTTCAACTCAAGAGACTTCATTTTCTTTATCTATCCAAAAATAAGTTCAATGGAACTACACAACTTGGTATGATTGCAAGGCTGCAAAATTTGTCTTCACTGGATCTTGCATACAATAACTTGTCAGTTGATGCAAGAATTGATGATGTGTCATCCTTTCCCAGTTTGAAAACTCTTGAGTTAGGTTCATGCAATTTGAGAGCATTCCCTAACTTTTTGAGAAATAAATCTTCACTACTCTACCTAGACTTGTCTAGCAATCACATTGAAGGAACAATACCCAATTGGATTTGGAAATTTGACAAAATGGTTATTTTGAATATTTCTTACAACTTTTTGACAGATTTTGAAGGACCTCTCCAAAACCTTACTTCAAATTTGTTCAAACTTGACCTTCACTCAAACTGTCTCCAAGGGGATGCTCCTACTTTTTTTAAAAATGCCATTGATTTGGACTACTCAAGTAATAAATTCAGCTCCATTAACTTCATTGACATTGGTAGTCACATTCCTTTCTTGTACTTTCTCTCCCTTTCAAACAACAATTTTCATGGAATAATCCATGAATCCTATTGTAATATTTCAAATCTTCGAGCACTTGATCTTTCCCATAACAGATTCAATGACCTCATTCCAAGATGTTTGACAAGAAGTAGCAACCTCAGGCTACTAAATCTTGGTGGAAATAAACTAAATGGTTATATTTCAGATACATTTTCAACTTCATGTTCTCTAAGGTTTTTGGATCTTAGTGGGAATCTTTTAAGTGGAACCATCCCAATATCTCTGGCCAATTGCCAAAAACTACAAGTTCTAAACCTTGGAAACAATCAACTAGTTGACGAATTTCCATGCTTCTTGAAGAGCATCTCCTCCCTCAAAGTTCTGATTTTAAGGTCAAACAAATTGCATGGGCATATCGGATGTTCCAATAACATTGGCAATTGGGAGACACTTCAAATTGTTGATTTAGCGTCTAACAATTTCAGTGGTACATTACCATCATCACTCTTAATGAGTTGGAAAACTTTGATGCTAGATGAGGGTGGACGATTTGGTCATTTATATTTTAATCTCTATGATGACTTCAATCCTGTGAATTTCATAACTGCAATTGTAGATCTCAGTAGTGATTTACAAATAAAGTTATCTAGCATTATAGCATCAGATCCACACTTTATAATAGATCGCATAATCACTCATCTCTTTGAGAAGGGTGTTGGTGTGCGAACATATGAGGCTTCAATTACAATTGTCAACAAAGGTAGACAGTTAAATTTGGTTAAAATCCTCATTGCCTTCACTTCCTTGGATTTCTCATCCAACAATTTTGAAGGGCCAATACCAAAAGAGCTTATGAATCTCATTGCACTGCATGCTCTTAACTTGTCACAAAATGACTTCTCAGGTAGCATCCCTCCTTCTTTAGGCAATCTAAAGCAACTTGAGTCCTTAGACTTGTCAAAAAACTCTTTAAGTGGAGAGATTCCAATAGAACTTGCAAAATTATCATTTATTGCTGTCGTGAATCTCTCTTATAACCATTTGATGGGGAAAATACCCACAGGCACACAAATTCAGACATTTGAGGCTAATTCATTTGTAGGCAATGAAGGGTTATGTGGACCTCCATTAACCTTAAACTGTGATGGTGGAAAGAAAAAATTTTCACCACTTCTATTTGAAACACCTAATTCTCATACAAAGGGTTTAATTGAATGGAATATCTTAAGTGTGGAGTTGGGGTTTACATTTGGCTTTGGAATTTACATATTCCCCCTTATTTTCTTGAAGAGATGGAGGATGTGGTATTCCAAACATGTGGAAAACATCCTTTACAAGATTGTTCCTCAACTTGATTTTGTTTACGTGCATAGGGAGGGACAATATTATAGAATTATGAGGTGGAACCCTTAG 3318 0.3571 MSIILWLFLLPFCLLNLSTNIILVTGHCLAHQQSLLLNLRNNLVFNPTKSKKLIHWNQSDDCCEWIGVTCNKGHVIALDLSQESISRGIDYFSSLFKLQYLQSLNLAHNDFHSEIPQEFKKLKNLRHLNLSNAGFEGQIPIEISYLTKLVTLDLSNTVTSKHALKLERPTIEMLVQNFTHIKELRLDGIAISAKGEVWSHVLSSLTSMQVLSMSSCNLSGPFDSSLGKLQSLLILQLDHNNLACLVPESLGSLFNLTTLQLSGCGLSGVFPKNIFQIPSLQVLDLSDNPNLLGSLPNFPSIGSLYNFNLSHTNFSGPLPESLDNLKQLSKLDLSNCQFRGTLPCSMSNLTQLVHLDLSYNNFTGHIPSFNRSKALEVLSLNHNHFMGTIPSTHFEGLINLKSIDLGDNFFDGRFPSSLFKLQSLQSLLLYYNKFDGVLDEFPNASLSLLEMLHLSGNNFEGLIPMSIFQLKRLHFLYLSKNKFNGTTQLGMIARLQNLSSLDLAYNNLSVDARIDDVSSFPSLKTLELGSCNLRAFPNFLRNKSSLLYLDLSSNHIEGTIPNWIWKFDKMVILNISYNFLTDFEGPLQNLTSNLFKLDLHSNCLQGDAPTFFKNAIDLDYSSNKFSSINFIDIGSHIPFLYFLSLSNNNFHGIIHESYCNISNLRALDLSHNRFNDLIPRCLTRSSNLRLLNLGGNKLNGYISDTFSTSCSLRFLDLSGNLLSGTIPISLANCQKLQVLNLGNNQLVDEFPCFLKSISSLKVLILRSNKLHGHIGCSNNIGNWETLQIVDLASNNFSGTLPSSLLMSWKTLMLDEGGRFGHLYFNLYDDFNPVNFITAIVDLSSDLQIKLSSIIASDPHFIIDRIITHLFEKGVGVRTYEASITIVNKGRQLNLVKILIAFTSLDFSSNNFEGPIPKELMNLIALHALNLSQNDFSGSIPPSLGNLKQLESLDLSKNSLSGEIPIELAKLSFIAVVNLSYNHLMGKIPTGTQIQTFEANSFVGNEGLCGPPLTLNCDGGKKKFSPLLFETPNSHTKGLIEWNILSVELGFTFGFGIYIFPLIFLKRWRMWYSKHVENILYKIVPQLDFVYVHREGQYYRIMRWNP 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00890 1105 PRINTS Leucine-rich repeat signature 946 959 - -
Phco1g00890 1105 PRINTS Leucine-rich repeat signature 664 677 - -
Phco1g00890 1105 Gene3D Ribonuclease Inhibitor 588 1024 IPR032675 -
Phco1g00890 1105 SMART LRR_typ_2 229 252 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 253 277 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 661 684 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 520 543 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 946 970 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 421 443 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 98 121 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 349 371 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 122 146 IPR003591 -
Phco1g00890 1105 SMART LRR_typ_2 446 470 IPR003591 -
Phco1g00890 1105 Pfam Leucine rich repeat 640 698 IPR001611 GO:0005515
Phco1g00890 1105 Pfam Leucine rich repeat 374 433 IPR001611 GO:0005515
Phco1g00890 1105 Gene3D Ribonuclease Inhibitor 491 587 IPR032675 -
Phco1g00890 1105 FunFam Leucine-rich repeat receptor protein kinase EMS1 295 392 - -
Phco1g00890 1105 FunFam Leucine-rich repeat receptor-like kinase 32 159 - -
Phco1g00890 1105 SUPERFAMILY RNI-like 297 628 - -
Phco1g00890 1105 SUPERFAMILY L domain-like 636 1012 - -
Phco1g00890 1105 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 358 1017 IPR046956 -
Phco1g00890 1105 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 656 750 - -
Phco1g00890 1105 FunFam Tyrosine-sulfated glycopeptide receptor 1 870 1021 - -
Phco1g00890 1105 SUPERFAMILY L domain-like 55 299 - -
Phco1g00890 1105 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Phco1g00890 1105 Gene3D Ribonuclease Inhibitor 271 490 IPR032675 -
Phco1g00890 1105 Gene3D Ribonuclease Inhibitor 27 270 IPR032675 -
Phco1g00890 1105 Pfam Leucine Rich repeat 543 558 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00890 Phco-Chr1 8663457 8666774 Tandem