Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00873 | ATGGGGTTGAGATCACGTACGCTAGAAATCACCGTTATCTCCGGTGAAAACGTGCGCATAATGGAGGACGCATACGTCGTCGTTCGGGCCGAGTCGCTCAACTGCTGCACCACCAGATCGGCCAAAGACGATGGCTCCAACTTCCTCTCGTGGAACCAGAAGTTCCTGTTGGACATGCCCATGCATGCAAGATCGATCACATTCGAGGTCCAATGCAGCAAATTCAAGGGTTTTCGCCCTCTTGGGGTGGCCAGAATCGCTGCCTCCGACTTCCTCGGGGACGCCGACGTCCCCGAAAATCAGTTGCAAGAGTTGAGTTACGGGTTGAGGGACTGGGAAGGGAAGAGAAACGGGGTCATTCACTTCGCCGTGAGAGTGGCACCTCCGCCACCACCAACGGAGGAGAAATGTCTAAAGCCCAGCGTGAAAGCGGTGGTGACCAGAAAGGGTTGCGGTGATGGAATGAAGAAGGAAGTTGTGGTTGGTGTCCCATTTTGGTTGAACCCTAACATTGTTTAG | 519 | 0.5395 | MGLRSRTLEITVISGENVRIMEDAYVVVRAESLNCCTTRSAKDDGSNFLSWNQKFLLDMPMHARSITFEVQCSKFKGFRPLGVARIAASDFLGDADVPENQLQELSYGLRDWEGKRNGVIHFAVRVAPPPPPTEEKCLKPSVKAVVTRKGCGDGMKKEVVVGVPFWLNPNIV | 172 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00873 | 172 | Gene3D | C2 domain | 4 | 145 | IPR035892 | - | |
| Phco1g00873 | 172 | PANTHER | INGRESSION PROTEIN FIC1 | 6 | 134 | - | - | |
| Phco1g00873 | 172 | ProSiteProfiles | C2 domain profile. | 1 | 113 | IPR000008 | - | |
| Phco1g00873 | 172 | CDD | C2_SRC2_like | 7 | 122 | IPR044750 | GO:0006952 | |
| Phco1g00873 | 172 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 7 | 135 | IPR035892 | - | |
| Phco1g00873 | 172 | SMART | C2_3c | 7 | 114 | IPR000008 | - | |
| Phco1g00873 | 172 | Pfam | C2 domain | 7 | 90 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00873 | Phco-Chr1 | 8438823 | 8439341 | Tandem |