Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00866 ATGGCCACGCCGGACGCCGTCGCAGCCTTCAGGCGCATCACCGGAGCACCGGAGTTCGTCGCCGTGCAGAAATTAGAGGCATATGGGGGCAATCTAAATGAAGCTATTAATGCCCATTTTCTTGAAGGGGATAGACACATATTATCAGGTCAAGGGCAAAATCTTGCTGCTGCCCCACAACATAATAACATAGGTGCAAGTAATCAAAACCGTGGCGGTGGATCAAATGGAATTTTGCCTTTTCTCAATGCTGCTAGAAGATTTCGACCTTCACTTTTACTTGACTCAAATTATAGGAGAGAACTTAGAGATCTATATAAGGGGATTGGTGATGGTGGTGCTACTGCATATACGAATCGCCCACCGCCTGCATGGACCAATAGTCCATTTGAGCCGCATTATCAATCAGGATTGAGCACTACAGGTGAAGATTTATCTTCTCATGCTTTAGGAATTGGTGGGACAGATGGTTACCAGAACCAGTACCCTTTAGCTCAGTCAAATGCCTCACACGGTTCTGATATTGAAACAGAGGAAGCAATGCTCCAGGCAGCTATAGAGGCCTCGAAAATGGAGAGAAGAGAAGGTTCTTCATGGGAGCGAATTGATGTTCTCAATGATTCATCTGATGGTGGGCTTCCTCAAACTCTTGTTCAGCAAGAAGATGATGATTTGGCCCGTGCAATTGCGTCATCCTTAGAGACCGCAGAGCAAGAGAAAACCACACGTGAGCTTTTAGTAAAAGAGGAAAAGGAAGGGCAGCTTGGAGTGCACTTTTCATTAGACAAGGCAAAGAAAACTAACAGTAGCAGAAACCAATTAGAGTTAGGAACATCATCTGATCAAAATGTAGCTCAAGATGTTGCACAACCAGTCATTGGTCATTTGTCAAATAACAAAGCTGGTGGTTGTAGTCAACATAATGAAGATGTGTTTCTTGCTAACAAGTGGGGTGGTATTTCTGCTGAAGAGATTAATGAAGCATTGTTAGTTGAAACTGCACTTTTTGGTGAAATTTCCACTCACAGCTTTCCATCCTTGCCTAGTATACAACATCGTCCAGAAGAAAATATGGATCCCAAGACGCAGGACATGTCCACTTCTATGTCACAATTATTAATTAACACTCGGTTGCTGAAACAACAACAGGATGCTGACTATCTAGCTTCACTACGAGCTGATAAACAAAAGGAATTGAATTCTTTCAATAAAACGGAAAGCCATTCCTCACAGGAAGAAGAATCACGCAAAAAGATGCTTGAAAAAAAGGAATTGGTGAAAAAGCTTGACACGAAAGAACTTAGGCTTTCCAAGGAACCACAATTGTCTGATGAAGTAATTACTATTGTTGTTCGAATGCCAGATGGTGGTCGCTGTGAACGTTGCTTCCTCAAAACTGACAAACTAGAGCTTCTTTTTGAGTTCATAGACGCATGTGGAGCACAGAAGCCTGGAACCTATAGATTTGTGAGGTCATACCCGCGTCGTGCTTACAGTATTAACGATTGCTTGTCAACCTTCAATGAAGTAGGCCTTAACAAAAGTAATGAAGCTTTGTTTCTGGAGTTGATTTAG 1575 0.4254 MATPDAVAAFRRITGAPEFVAVQKLEAYGGNLNEAINAHFLEGDRHILSGQGQNLAAAPQHNNIGASNQNRGGGSNGILPFLNAARRFRPSLLLDSNYRRELRDLYKGIGDGGATAYTNRPPPAWTNSPFEPHYQSGLSTTGEDLSSHALGIGGTDGYQNQYPLAQSNASHGSDIETEEAMLQAAIEASKMERREGSSWERIDVLNDSSDGGLPQTLVQQEDDDLARAIASSLETAEQEKTTRELLVKEEKEGQLGVHFSLDKAKKTNSSRNQLELGTSSDQNVAQDVAQPVIGHLSNNKAGGCSQHNEDVFLANKWGGISAEEINEALLVETALFGEISTHSFPSLPSIQHRPEENMDPKTQDMSTSMSQLLINTRLLKQQQDADYLASLRADKQKELNSFNKTESHSSQEEESRKKMLEKKELVKKLDTKELRLSKEPQLSDEVITIVVRMPDGGRCERCFLKTDKLELLFEFIDACGAQKPGTYRFVRSYPRRAYSINDCLSTFNEVGLNKSNEALFLELI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00866 524 SMART uim 177 196 IPR003903 -
Phco1g00866 524 SMART uim 220 239 IPR003903 -
Phco1g00866 524 CDD UBA_Ubx1_like 4 40 - -
Phco1g00866 524 Gene3D - 443 523 - -
Phco1g00866 524 Pfam UBA-like domain 5 44 - -
Phco1g00866 524 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 220 239 IPR003903 -
Phco1g00866 524 Pfam Ubiquitin interaction motif 177 189 IPR003903 -
Phco1g00866 524 Pfam Ubiquitin interaction motif 220 235 IPR003903 -
Phco1g00866 524 PANTHER FAS-ASSOCIATED PROTEIN 10 523 - -
Phco1g00866 524 SUPERFAMILY Ubiquitin-like 411 516 IPR029071 -
Phco1g00866 524 ProSiteProfiles UBX domain profile. 442 520 IPR001012 GO:0005515
Phco1g00866 524 SMART ubx_3 440 523 IPR001012 GO:0005515
Phco1g00866 524 MobiDBLite consensus disorder prediction 399 419 - -
Phco1g00866 524 Pfam UBX domain 445 522 IPR001012 GO:0005515
Phco1g00866 524 CDD UBX 448 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00866 Phco-Chr1 8320326 8329327 Dispersed