Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00843 | ATGTGTGGTGCTGCAACTATGCAGAGAAGCTTGGCGCCAATTGTCCGCATGCCCAAACTCATTCCACTCTCCCTTCAACTCTCAAATCTCTCTCCCTCTCTTTCACCTCACCACTCCCAAAATGCACCCTCAGAACACAACATCGCCACCATCATTCACTCCCTCTGCGACTCTCGCCGTTTCTCCGAAGCGCACCATCGCTTCTCCCTCTCCCTCGTCTCCGGCTCCCTCCCCGACGAGCGCACCTGCAACGTCCTCCTCGCTCGCATGCTCGCTTCTCGAACCCCTCACGCAACGTGGCGCCTCATCCAATCCCTCATCGCTTCCAAGCCCGGTTTCGTTCCCTCTTTGGTCAACTACAACCGTCTGATGGACCAGTTTTGCGATGCCCATCAACCCCTGGACGCTCACAGGCTGTTTTTTGACATGAAGAGCCGTGGGTATTGCCCAAATGTTGTCTCTTTCACCACTTTGATTAAAGGGTACTGCTTGGTTCGTGGAATTAGGGACGCGCGCAAGGTGTTCGATGAAATGCTTGAGAGTGGCGTGGAGCCGAATTCGGTGACTTACAGTGTTTTGATTCGCGGTGTTCTTCGGGAGAGGGATGTGGAAGGTGGGAGGGAGTTGATGTGCAGGTTGTGGGAGATGATGAGTGTAGAAGCTGAAGATTCGGTGAAGTCCGCGGCATTTGCAAATTTGGTTGATTCTTTGTGCAGGGAGGGGTTTTTTGGTGAAGTGTTTAGGATTGCTGAGGAGTTGCCGTTCGGGAGTGGTTTTTCTGAGGAGGTTGCTTATGGACAGATGGTGGATTCACTTTGCAGAGTTGGGAGGCATAATGGGGCAGCTAGGATTGTTTATGTAATGAGGAAAAGAGGGTTTGTTCCGAGTGAGGTGTCGTATAATTATGTCATTCATGGGCTTAGCAGGGATGGTGATTGTATGAGGGCTTATCAGTTGTTAGAGGAAGGAGCTGAATTTGGGTTTATGTTATCGGAGTATACTTATAAGGTACTCGTGGAAGCTCTTTGCGAAGTGTTGGATGTGGACAAGGCGAGGGAAGTTTTGAAACTCATGCTGAGTAAGGAAGGTGTTAACAAGACTAGGATTTACAACATTTACTTGAGAGCTCTTTGTCTTGTGAACAATCCGACAGAGCTTTTGAATGTGCTTGTGCTTATGCTTGAGAACCAGTGTCATGCTGACGTGATCACCCTCAACACGGTGATCAATGGCTTTTGCAAGATGGGTAGGGTTGATGAAGCATCAAAGGTATTGCATGATATGTTAATGGGAAAATTTGCTGCACCCGATGTTGTGACCTTCACTACTTTGATTTCTGGTATGTTGGATGCTGCAAGAATCAATGAAGCTCTTCATCTGTTTCATAAGCTGATGCCGGAAAATGGAATAAAACCTAGTGTTGTGACTTATAATGCTCTTCTCCGAGGTTTGTTCAAACTAAAGCGACCAAATGATGCATTGAGGGTTCTTGATGACATGGTAAATGATGGCATTACGGCAGATAGTACCACATATACAGTTGTGGTAGAAGGTCTATGTGAATCTGACCAAGTAGAAGAGGCAAAGAGATTTTGGCACAATGTTATATGGCCTTCAAGGGTTCATGATAATTTTGTTTATGCAGCAATTCTGAAAGGGTTCTGCCGCTCTGGCAATTTTAAGGAGGCTTGTCATTTCTTGTATGAGTTGGTAGATTCTGGGGTCTCTCCGAATATATTTGGTTATAATATTCTGATCAACTGTGCGTGCAACCTTGGTCTGAAAAGTGAAGCTCACCAAATTGTCAGAGAGATGAAAAAGAATGGGCTCACTCCTGATTCTGTGACATGGAGAATTCTTGACAAGTTAAATGGCAAAGAGGGGAAGGACATCCATTCCGAAGATCCTACCATGTCAACATTTTATGAGGCATGA | 1935 | 0.4636 | MCGAATMQRSLAPIVRMPKLIPLSLQLSNLSPSLSPHHSQNAPSEHNIATIIHSLCDSRRFSEAHHRFSLSLVSGSLPDERTCNVLLARMLASRTPHATWRLIQSLIASKPGFVPSLVNYNRLMDQFCDAHQPLDAHRLFFDMKSRGYCPNVVSFTTLIKGYCLVRGIRDARKVFDEMLESGVEPNSVTYSVLIRGVLRERDVEGGRELMCRLWEMMSVEAEDSVKSAAFANLVDSLCREGFFGEVFRIAEELPFGSGFSEEVAYGQMVDSLCRVGRHNGAARIVYVMRKRGFVPSEVSYNYVIHGLSRDGDCMRAYQLLEEGAEFGFMLSEYTYKVLVEALCEVLDVDKAREVLKLMLSKEGVNKTRIYNIYLRALCLVNNPTELLNVLVLMLENQCHADVITLNTVINGFCKMGRVDEASKVLHDMLMGKFAAPDVVTFTTLISGMLDAARINEALHLFHKLMPENGIKPSVVTYNALLRGLFKLKRPNDALRVLDDMVNDGITADSTTYTVVVEGLCESDQVEEAKRFWHNVIWPSRVHDNFVYAAILKGFCRSGNFKEACHFLYELVDSGVSPNIFGYNILINCACNLGLKSEAHQIVREMKKNGLTPDSVTWRILDKLNGKEGKDIHSEDPTMSTFYEA | 644 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00843 | 644 | Pfam | PPR repeat | 546 | 575 | IPR002885 | - | |
| Phco1g00843 | 644 | Pfam | PPR repeat | 439 | 464 | IPR002885 | - | |
| Phco1g00843 | 644 | Pfam | PPR repeat | 119 | 147 | IPR002885 | - | |
| Phco1g00843 | 644 | Pfam | PPR repeat | 263 | 293 | IPR002885 | - | |
| Phco1g00843 | 644 | Gene3D | Tetratricopeptide repeat domain | 215 | 363 | IPR011990 | GO:0005515 | |
| Phco1g00843 | 644 | Gene3D | Tetratricopeptide repeat domain | 539 | 630 | IPR011990 | GO:0005515 | |
| Phco1g00843 | 644 | Gene3D | Tetratricopeptide repeat domain | 93 | 208 | IPR011990 | GO:0005515 | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 401 | 435 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 543 | 577 | IPR002885 | - | |
| Phco1g00843 | 644 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 327 | 620 | - | - | |
| Phco1g00843 | 644 | Pfam | PPR repeat family | 472 | 520 | IPR002885 | - | |
| Phco1g00843 | 644 | Pfam | PPR repeat family | 295 | 343 | IPR002885 | - | |
| Phco1g00843 | 644 | Pfam | PPR repeat family | 150 | 197 | IPR002885 | - | |
| Phco1g00843 | 644 | Pfam | PPR repeat family | 577 | 620 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 437 | 472 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 116 | 150 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 578 | 612 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 120 | 152 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 263 | 297 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 333 | 361 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 439 | 474 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 153 | 187 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 475 | 508 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 582 | 614 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 403 | 433 | IPR002885 | - | |
| Phco1g00843 | 644 | NCBIfam | pentatricopeptide repeat | 546 | 579 | IPR002885 | - | |
| Phco1g00843 | 644 | Gene3D | Tetratricopeptide repeat domain | 431 | 538 | IPR011990 | GO:0005515 | |
| Phco1g00843 | 644 | Gene3D | Tetratricopeptide repeat domain | 364 | 430 | IPR011990 | GO:0005515 | |
| Phco1g00843 | 644 | Pfam | PPR repeat | 397 | 428 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 151 | 185 | IPR002885 | - | |
| Phco1g00843 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00843 | Phco-Chr1 | 8022874 | 8024808 | Dispersed |