LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco1g00841	ATGAACGAGAACAATAACTTATCCCTTGATGACATTCCAATGGTTGAAGGTGAGGTGTCAGCTGTTGGTCATGACACAGTTTTGGACAATGTTGAACCCTCTGTTCCTACAGTTGGAATGTGTTTTGACAGTCCTCCTACAGTTGGTATGTGTTTTGACAGTGCAAAAGCTGTGAAGACTTACTACAGACAATATGCAATTACAAAGGGATTTGGCATTAGGATTAGAAGTTCGAAGAAAGGGGTGGACAATGAAATTAGGTACTTCATGTTAGTATGTTCAAGAGAAGGGAAATATGTCTCCTCCATACCTACAGAAATCAAGACCCTTCCCACCCAAGCCAATGAATGTCAGGCTCGTATAACTGTTGGAAGAAAGGAGGGCAAATGGTATATAATGTCTGTCATTGACGAACACTCTCATGATCTTAGCCCGACAAAGTCAAGGTTATTTTGTGGTAATAGGAAACTAAAATTGAAGAGAAATCTTGAGATGAATGGCGATGTAGGAGTGAGGATCAACAAAAGTTTTCAATCATTGGTCAGCGCTGCGGGAGGTTATGACAGCCAAGAATTTGTTGAGCGAGATGTTCGAAACTATGTTGGTAAACAACGACATGCCTTGGGTAAGGATGGTGATGGTAAAGCACTGTTGAGCCATTTTTTACGCATGCGAGAATTGAATAAGGATTTTTTCTTCGACATTGACATAGATGATGAAAACCGCATAAGAAATTTTTTCTGGGCAGATGCAAGAAGTCGGGCAGCATGTTATGATTTTGGGGACATTGTATCATTTGATACCACATACCTAATCAACAAATATGACATGCCTTTCACACCGTTTCTTGGTGTAAACCATCATGGGCAATATATTTTGTTAGGTTGTGGACTCTTGTCTTCAGAAGACACCAACACATTTGTATGGTTGTTTGAGTGTTGGCTTCGATGTATGTCATACAAGGCCCCACAAGGCATTGTGACAGACCAATGTAATGCAATGAAAAATGCCATTTCGGTTGTCTTCCCTCAAACACATCATAGGTGGTGTCTATGGCACATCATGAAACAGATTCCTGAAAAATTGCAAGGCTATGGTGAATACAAGGAGATCAAACATGCAATGAAGGTTGTGGTTTACGAAACGATGACTGTTGATGAATTTGAATGTGAATGGGGAAAATTTATAAACACATTTGGATTGATGAACGATGAATGGTTGGGAACCCTTTATGACGAACGTCATAGATGGGTACCTTGTTATTTAAAAAATCATTTTTGGGCTGGAATGTCAACAACCCAAAGAAGTAAGAGCATGAATGCTTTTTTTGACGGGTACATCAATTCAACCACAACCTTGCAACAATTTTTGCATCAGTATGACAATGCATTGCAGCACAAGGCTGAGAAGGAGTATGAGGCTGACTTTGCATCCTTAAACACAGTCATTCCATGCGGATCTCAGTCCCTCATAGAAAGACAATTCCAGACAGAGTATACCCATGCAAAATTTGGCGAAGTTCAAACAGAATTCAGGGGTAAAATGAATTGTGTGGTTCAGAATGTCGTGGTCAATGGAGATGTTTGCAGATACGATGTCATGGAGGAGTTCATACACAATGGACATAGCCGTGACAGGTTGTATATTGTATGTTATGATCGTGACAACCACAACGTGAACTGTAACTGTTTGTTGTTTGAGTTTAGGGGGATTTTGTGCAGACATTGTTTGGTTGTGCTGGCACAAGAAAGACAGAAACAGGTTCCTGCAAAGTATGTGTTGATGAGGTGGAGCAAAAACGTCCGGAGAAAACATACTTACATCAAAACATCTTATAACATAACAGATAAAGAACCTCATATTGAAAGATATGATGCACTGTGCAAGACATTTTCTGAAATTGCTCAGGTGGCATGTGAAAAACCCGAGACCACTGAATTATTATTTCAGCATCTGCATGCCTTTGCCACTCTTCATGCCCTGCCTGGCCCCACAATAACACAGCACATCAATGGTGGGCAGTTAGATATAAATGCTTTAGACAGCACACCCCAATCGAATGATGCATCTAATCACACTGTCTACCCAGAAATTCGTAGCCCAGTTGCAGTTCAAAGAAAGGGACAACCCCGTTCATGA	2139	0.4058	MNENNNLSLDDIPMVEGEVSAVGHDTVLDNVEPSVPTVGMCFDSPPTVGMCFDSAKAVKTYYRQYAITKGFGIRIRSSKKGVDNEIRYFMLVCSREGKYVSSIPTEIKTLPTQANECQARITVGRKEGKWYIMSVIDEHSHDLSPTKSRLFCGNRKLKLKRNLEMNGDVGVRINKSFQSLVSAAGGYDSQEFVERDVRNYVGKQRHALGKDGDGKALLSHFLRMRELNKDFFFDIDIDDENRIRNFFWADARSRAACYDFGDIVSFDTTYLINKYDMPFTPFLGVNHHGQYILLGCGLLSSEDTNTFVWLFECWLRCMSYKAPQGIVTDQCNAMKNAISVVFPQTHHRWCLWHIMKQIPEKLQGYGEYKEIKHAMKVVVYETMTVDEFECEWGKFINTFGLMNDEWLGTLYDERHRWVPCYLKNHFWAGMSTTQRSKSMNAFFDGYINSTTTLQQFLHQYDNALQHKAEKEYEADFASLNTVIPCGSQSLIERQFQTEYTHAKFGEVQTEFRGKMNCVVQNVVVNGDVCRYDVMEEFIHNGHSRDRLYIVCYDRDNHNVNCNCLLFEFRGILCRHCLVVLAQERQKQVPAKYVLMRWSKNVRRKHTYIKTSYNITDKEPHIERYDALCKTFSEIAQVACEKPETTELLFQHLHAFATLHALPGPTITQHINGGQLDINALDSTPQSNDASNHTVYPEIRSPVAVQRKGQPRS	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco1g00841	712	ProSiteProfiles	Zinc finger SWIM-type profile.	548	584	IPR007527	GO:0008270
	Phco1g00841	712	MobiDBLite	consensus disorder prediction	681	712	-	-
	Phco1g00841	712	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	43	653	IPR031052	GO:0006355
	Phco1g00841	712	Pfam	FAR1 DNA-binding domain	60	144	IPR004330	-
	Phco1g00841	712	Pfam	MULE transposase domain	263	356	IPR018289	-
	Phco1g00841	712	SMART	26again6	559	586	IPR006564	GO:0008270
	Phco1g00841	712	Pfam	SWIM zinc finger	560	580	IPR007527	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco1g00841	Phco-Chr1	8017848	8019986	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Phco1g00841		MULE	5.9e-32	CL0219