Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00828 ATGGCTTTCCCTCCTTACCGACGATCCCACTTGCGTAGCAACACTTACCATGCCCTTGTTCACCTCCTCTCTCACCTTGCTGAGTACAACTCTTCACATGAAACTCCAACTCAACCCTTCAACATTCCCGATAATGGCAGTGGTAGAATGGATGGAGTAAACCAAGAAAAGGAGCCTAAGTGCTCTGAAGTTGTTGATTCTGATTTTTTGGATCCTATAAGCCAGAAGGATATACTGGAGGTTCAGGAGCTCATTAAGGGGGTTGGAGACAAGGATACGGATTTTACTTCCAACAATATGGTCCTAGATGATATAGAACATATGATGGCAATAGAGGACACGTCTAACCAAGTAATTGGTTTTGATAAGGAGCAGAAGCTAATAAATGAGTTTGAACTGGTTATGAAAGGAACTGAAGATCTTCTTTGCGATAGTGATTTAATCCCCTTGAATGCTGGATTTGATGAGAAACTTAATGATGGCTGTGAAGTTGGGTTAATGGATTCTCAAGTAGACATGGAAGAGGGTGAAATTTCTGGAGACTTGGGAAAGGATGACAATTCATTTGATGTGTCTTCTGCAGATGCTTTGCGGCAGATGCAGGCAGATGAAGTTCAGAAGCCTGTAAATGTAACTAGAAATATGATATATCCTTCTATGATTAAGAATCAAGAAAAGGAAAAAGGTTGTGAGTCTACTTCCTCTATGTTAAATTCACTTCAAGATGGTAATAATAGTAGACAAGTGGAGCCTAGAACTGGTGGCAACAAAGGAATTGCATGCAGAGTTGAAGTAGCAATTTCTGAAGAAACTTTTGAATGTAAGAAGGAAGATAAAACAAAGTTGGTGAATGCCAGTAAAAGGAGCAAGCGTGGTGGAAAGAAAGAAAAAAAGAAGATGGCATATAGAATGAAGAGAGCAGCAAAAAACAGAGAACTAGGTGTTAAAAGTTTGCAGTTGCAGAAGTATATACAGAAACCAAAACTTGTGTCACATTGTCGCCATTATCTTGTGGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTCTCACATGATGTAGTGCCTCTAACAAAATCCAAGCCATGTAGTTACTTTGCTCTTCACTCTTGCATGAAAGGCGATGATTGCCCATTTGATCATGAGCTCTCAAAATATCCTTGTAACAATATTGTATCCCAAGGCTCTTGTAGAAGAGGTGAAACTTGCCTTTTTTCACACCAGGTAGCATCCAAAGAAGATATCCCTACTCCTTCAAACATATGCAGACCAGTGTTGTCTACTGTTCAGTCAGGAAATGCAAATTCCAGTACACCTCTTAGCAATAATCATGTCTCTTGTTCTGTCCAGCAAAACCGCATAACTCGTTCTTCAGGAATTCATTCTCGCATCAATGTTGAACATAAGGTGACAAACACTGCACAAAAACAGACACCACCTAAAGGAATTAGTTTCATCAATCTTGCAAAATTAAAACCCAGCCCTTCTGCACTTAAACAAGGCACAGTAACAAAAAAGGAAAGTCCTTTACAAGCAGGGACGCACAAAGATCAAAGTGCATTTGAAAAAACTCAAAACAAGGTGGAGATTGCTGAGAAATTTCCATCTGTGACACCCAAAGGAGTAAACTTTCTTTCTTTTGGCAACGGCTCTGTCTGTGGCTTTAAAAGTCATATTCGTCCCAATGTGAGTACAGAAAATGGTTTCAAGTTGCCTCAGTTACTCAATTTTGGTTTGCCTGAGAAGGCTAATTCTTCTCTAAACAAGAACGACTACAGCAAAGGTAGTGACAGGACAAAACAAAGTGTATCACTGACTGATATATTCTTAAATGAGATTTTAGGAAAAAATCAATCTGCGACAGAAGGAATGAAATCAAAGTTTCCAGATAAAACCTCAGCTACACCAAGTCCTTTTGTTTCAATCCAGTCTTCTGAACACCTAAAATCTGGTTATCATAAGCATGCATCAAACTCAGGTCAAAAGGCATTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATACCCTTCCGGTGATTCGTCAGCATGA 2067 0.3957 MAFPPYRRSHLRSNTYHALVHLLSHLAEYNSSHETPTQPFNIPDNGSGRMDGVNQEKEPKCSEVVDSDFLDPISQKDILEVQELIKGVGDKDTDFTSNNMVLDDIEHMMAIEDTSNQVIGFDKEQKLINEFELVMKGTEDLLCDSDLIPLNAGFDEKLNDGCEVGLMDSQVDMEEGEISGDLGKDDNSFDVSSADALRQMQADEVQKPVNVTRNMIYPSMIKNQEKEKGCESTSSMLNSLQDGNNSRQVEPRTGGNKGIACRVEVAISEETFECKKEDKTKLVNASKRSKRGGKKEKKKMAYRMKRAAKNRELGVKSLQLQKYIQKPKLVSHCRHYLVGRCHEGDKCQFSHDVVPLTKSKPCSYFALHSCMKGDDCPFDHELSKYPCNNIVSQGSCRRGETCLFSHQVASKEDIPTPSNICRPVLSTVQSGNANSSTPLSNNHVSCSVQQNRITRSSGIHSRINVEHKVTNTAQKQTPPKGISFINLAKLKPSPSALKQGTVTKKESPLQAGTHKDQSAFEKTQNKVEIAEKFPSVTPKGVNFLSFGNGSVCGFKSHIRPNVSTENGFKLPQLLNFGLPEKANSSLNKNDYSKGSDRTKQSVSLTDIFLNEILGKNQSATEGMKSKFPDKTSATPSPFVSIQSSEHLKSGYHKHASNSGQKAFLSTLAFAAEHESDIKMKYPSGDSSA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00828 688 MobiDBLite consensus disorder prediction 32 55 - -
Phco1g00828 688 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 161 684 IPR045124 GO:0003723|GO:0045892
Phco1g00828 688 SUPERFAMILY CCCH zinc finger 328 352 IPR036855 GO:0046872
Phco1g00828 688 Pfam CCCH-type zinc finger 332 352 IPR041367 -
Phco1g00828 688 MobiDBLite consensus disorder prediction 499 518 - -
Phco1g00828 688 SMART c3hfinal6 328 353 IPR000571 GO:0046872
Phco1g00828 688 SMART c3hfinal6 356 382 IPR000571 GO:0046872
Phco1g00828 688 SMART c3hfinal6 384 408 IPR000571 GO:0046872
Phco1g00828 688 ProSiteProfiles Zinc finger C3H1-type profile. 386 409 IPR000571 GO:0046872
Phco1g00828 688 MobiDBLite consensus disorder prediction 499 520 - -
Phco1g00828 688 Gene3D - 319 384 - -
Phco1g00828 688 MobiDBLite consensus disorder prediction 234 254 - -
Phco1g00828 688 MobiDBLite consensus disorder prediction 234 252 - -
Phco1g00828 688 ProSiteProfiles Zinc finger C3H1-type profile. 356 383 IPR000571 GO:0046872
Phco1g00828 688 ProSiteProfiles Zinc finger C3H1-type profile. 327 354 IPR000571 GO:0046872
Phco1g00828 688 Pfam RNA-binding, Nab2-type zinc finger 361 380 - -
Phco1g00828 688 Pfam RNA-binding, Nab2-type zinc finger 394 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00828 Phco-Chr1 7681462 7685707 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco1g00828 zf-CCCH_4 1.4e-06 CL0537