Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00812 | ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTTTATGTGGTTGACTTGTTAACCCTTGAAGGCATTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATATCTCACGATGTGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCTCATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTACTGAGAAGCAAAACGAAATTAATAGAACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTTGACAAATGTGCAGTATGCTCAAAAACAGTGTATCCTCTTGAAAAGGTGTCACTGGAAGGGGAATGCTACCACAAGACTTGTTTTAGGTGTGCTCATGCAGGGTGCACTCTGACACATTCAAACTATGCTGCCCTTGATGGTGTTGTCTACTGCAGAGTCCACTTTGCACAGCTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACATAAGAGGACTGGTTCATCTACACCTCCTGAGCCTCTATTTGAAGAGCCATCACATCCAGCACCAGCAGCAGAATCTGAGGAACCTCCAGTAGTAGAAGATGAAGAAAAGGAAGAAAAAGAAGAAGAGAGCTCTTGA | 660 | 0.4424 | MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMCTYSSMDGVLYCKPHFEQLFKESGNFSKNFAKSTEKQNEINRTPSKLSSMFSGTLDKCAVCSKTVYPLEKVSLEGECYHKTCFRCAHAGCTLTHSNYAALDGVVYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPAPAAESEEPPVVEDEEKEEKEEESS | 219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00812 | 219 | MobiDBLite | consensus disorder prediction | 175 | 219 | - | - | |
| Phco1g00812 | 219 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Phco1g00812 | 219 | MobiDBLite | consensus disorder prediction | 202 | 219 | - | - | |
| Phco1g00812 | 219 | Gene3D | Cysteine Rich Protein | 5 | 100 | - | - | |
| Phco1g00812 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Phco1g00812 | 219 | Pfam | LIM domain | 104 | 159 | IPR001781 | - | |
| Phco1g00812 | 219 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Phco1g00812 | 219 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Phco1g00812 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 96 | 129 | - | - | |
| Phco1g00812 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 130 | 169 | - | - | |
| Phco1g00812 | 219 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Phco1g00812 | 219 | SMART | lim_4 | 103 | 155 | IPR001781 | - | |
| Phco1g00812 | 219 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Phco1g00812 | 219 | FunFam | LIM domain and actin-binding 1 | 98 | 168 | - | - | |
| Phco1g00812 | 219 | PANTHER | OS06G0237300 PROTEIN | 6 | 83 | - | - | |
| Phco1g00812 | 219 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Phco1g00812 | 219 | ProSiteProfiles | LIM domain profile. | 102 | 162 | IPR001781 | - | |
| Phco1g00812 | 219 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Phco1g00812 | 219 | Gene3D | Cysteine Rich Protein | 101 | 168 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00812 | Phco-Chr1 | 7541309 | 7543035 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Phco1g00812 | LIM | 4.5e-09 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco1g00812 | 1 | 7541309 | 7543035 | Phco1g00812 | 1 | 7541309 | 7543035 | ECH | |
| Phco3g02529 | 3 | 51966180 | 51967884 | Phco1g00812 | 1 | 7541309 | 7543035 | PCT |