Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00791 ATGGGGATTCAGTGTTCCAGACTCATGCCATGCTGTGTGGATTCACAAGTTAAGGCATCTGTTATTGAAACACCAGATGCTGAAATTGAGGATAGTAGTGAGGTCAGTAACTGGCCTACATTCCGTGAATTTACACTCGAACAACTTAAGAATGCAACATCTGGTTTTGCTGTTGAGAACATTGTATCTGAACATGGAGAGAAGGCTCCCAATGTTGTTTATAAAGGAAAGCTGGAGAATCAAATGAGGATTGCTGTTAAGCGATTTAACAGGAATGCTTGGCCCGATGCTCGACAGTTTTTGGAGGAAGCAAGATCAGTGGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTTTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTAGCAAAACACCTTTTCCATTGGGAAACACAACCTATGAAATGGGCAATGCGACTAAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCCTATAGAGTTCTTTTTGATGAGGATGGTAATCCCAGGCTTTCAAGTTTCGGTCTTATGAAAAACAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATGCACTCGATGTGATTCGTGGAAGAAATCTTCAGATGCTGACAGATTCTTGTTTGGAAGGACAATTTTCTGATGATGATGGAACTGAGTTGGTACGCTTGGCATCTCGATGTTTACAATATGAACCTAGAGAGCGGCCTAATCCAAAATCATTGGTAGCTGCTTTGGCTCCTCTTCAGAAGGAAACAGAGGTTCTTTCACATGTCTTGATGGGCATCCAGCACAGTACTACTTTTGCCTCATTATCTCCGCTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAATATTGGCTACAAAGATGATGAAGGAGTGGCAAATGAGTTATCATTTCAGATGTGGACTGATCAGATGCAGGATACATTAAATTGCAAGAAAAAGGGGGATGTTGCTTTCCGGCAGAAGGATTTTAGACTGGCAATTGAGTGCTACACACAGTTCATTGATGCTGGAACAATGGTTTCTCCAACAGTCTTTGCACGGCGTAGTATGTGTTATCTCATCAGTGACATGCCTCGGGAAGCCCTGAGCGATGCAATGCAGGCGCAAGTCATTTCCCCGGTTTGGCATATAGCATCATATCTTCAATCTGTTGCCCTTACTGGACTTGGGATGGAGAATGAAGCCCAAGCAGCGCTTAAAGATGGCTCAACTCTGGAATCCAAGCGGAGTGCAACTACCAAGCAAAAATGA 1476 0.4356 MGIQCSRLMPCCVDSQVKASVIETPDAEIEDSSEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDARQFLEEARSVGQLRNQRLANLLGCFCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDVIRGRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVLSHVLMGIQHSTTFASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVANELSFQMWTDQMQDTLNCKKKGDVAFRQKDFRLAIECYTQFIDAGTMVSPTVFARRSMCYLISDMPREALSDAMQAQVISPVWHIASYLQSVALTGLGMENEAQAALKDGSTLESKRSATTKQK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00791 491 FunFam probable serine/threonine-protein kinase At4g35230 380 489 - -
Phco1g00791 491 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Phco1g00791 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Phco1g00791 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 485 IPR045845 GO:0004672|GO:0009742
Phco1g00791 491 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00791 491 SUPERFAMILY Protein kinase-like (PK-like) 34 317 IPR011009 -
Phco1g00791 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Phco1g00791 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Phco1g00791 491 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Phco1g00791 491 Gene3D Tetratricopeptide repeat domain 380 491 IPR011990 GO:0005515
Phco1g00791 491 SUPERFAMILY TPR-like 381 481 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00791 Phco-Chr1 7312957 7318457 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Phco1g00791 PK_Tyr_Ser-Thr 6.6e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00791 1 7312957 7318457 Phco1g00791 1 7312957 7318457 ECH