Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00769 ATGGCTGTGGTGAGTCCTATGCCTGCAACTCCACCACAGGTGAATCCTACGAACAAGCTTCGTGATATTGGGGTTCCTGGAATCACAGCTAGTAGGAGAGAAATTGTAAGTGAGCCTAGTCCAAGTATGGTTAATGATACAGTCTATGTTGCTGTGGCAAAAGATGTGAAAGACAGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCTTTGATGGGTGCTAAATTTCCTGCAAGTTCCCTGAGAGAGCAGGAAGTTCAAGATTATCATGAAAGGGAAAGGCAAAACATTCAGAAGACTATGGATGCCTATCTTTATATCTGTCAAAAAATGGGGGTGACGGGAGGGAAACTACACATTGAAATGGACAGTGTAGAAAAAGGGATTGTAGAACTCATCCACCAGTATGGCATACAGAGGCTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGATATCCCTCAAATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCATGTCAGATACAGTTTATCTGCAACGGGTACCTCATACACACAAGATTGAATAGAGGGAATGTAGAGGTCGTATCTCCTTCAGTGCAGCGAATAGAAAACTCTGAAGTTGGGCATTCACCTAACATGGGGTCGCCATCCACAGTGCAAGGGCAAAATCGTTGGAGAAAACTAAGTAATCCCGGAAAAGAGTTATTTCGTAGAGTTAGGACTATCAGTGATGGAGGTGGGAGGAGCATTGGATCTGTTTCTTCTTTAGAAGGGTTCTTAACTCCTCAGAGAAAGTTCGGTAAAGAAGCAAGTTGTGATGAGGTAGGTGGGCAGTCACGGCGAAGTCCTTCAGTATTCTCAATGTGCTGTGAGAGTTGTTCGGTTGATCCATATTTTATTAACAGTGAGAATGTAGACTTGTCATTGAATGACTTTTCTATGAATAACAAGGATCTTCATCATTCACCATCTCCAAGTGTACTGGATGGAGGAATGGATGATGCTCTCTATGCTCAACTTGAACAAGCAATGGCTGAGGTTGCGAATGCGAAGCATGATCTATATCAAGAAACTTCTAAGCGTGTGAAAGCAGAAAGAGATTGCATTGATGCTATACGCAAGGCTAAAGCCATTGAAAATTTGCATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGATGATATGAAGAGGCAGATAAACAAAGTTTATGAGGAACTCCAACTCGCCTTAGATCAGAAATTATCTCTAGAGAATCGAATTGCATCAACTGAACTTATTATAAAGGAGTTGGAGCAGAAGAATATATCTGCTGATGAGCTGTCTCAAAAGTACAAGAATGAAGTAGATGATTTGCAAATGCGGCGTGATAATGCATTGGGAGAGGCCGAGGAGTTAAGGAGAAAACAAGAGGAAGCCTCAAGCACGCACTGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCTCTCAAGATTGGACAAGGTGGATATGGAAGTATATTTAGAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGATAGCACCCAAGGTCCAGTGGAGTTTCAACAAGAGATTGAAGTATTGAGCAAGTTAAGGCACCCCAACCTTGTGACACTTATAGGGTCCTGCCCAGAATCCTGGACTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTAAACTGCAAGGATAACACACCTCCATTATCATGGCAAACTAGAATTCGCGTTGCTGCAGAACTCTGCTCGGCTCTCATCTTTCTTCACTCAAGTAAACCTCACAGCATAGCACATGGTGATTTAAAACCAGGCAACATTCTCCTTGATGCAAACTTTGTAAGCAAGCTCGGTGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCACTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTACTTCTGGTGAACTCACGCCAAAGTCAGATGTTTATTCATTTGGAATCATTCTATTGAGATTAATCACTGGGAAACCTGCTTTGGGAATAGCAAAGGAAGTGCAATATGCATTAGATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCGGGAGACTGGCCATTTATGCTAGCTGAAGAGTTGGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAACAGAAAGAGCAGACCAGATTTTTATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGAGGCACCAACACCTTTCAACTGGGTTCTCAAGGAAAATGCCAACCTCCTCCATATTTCATTTGTCCAATCTCTCTGGAAGTCATGCAAGATCCACACGTGGCTGCAGATGGTTTTTCTTATGAAGCTGAGGTTATACGTGAATGGCTGAAAAATGGTCGACACGTTTCACCAAGGACAAACTCTAAGTTTGCACATCACCACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCACTGA 2658 0.4214 MAVVSPMPATPPQVNPTNKLRDIGVPGITASRREIVSEPSPSMVNDTVYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPLMGAKFPASSLREQEVQDYHERERQNIQKTMDAYLYICQKMGVTGGKLHIEMDSVEKGIVELIHQYGIQRLVMGAASDKYHSRRMISLKSKKAIYVCEQAPASCQIQFICNGYLIHTRLNRGNVEVVSPSVQRIENSEVGHSPNMGSPSTVQGQNRWRKLSNPGKELFRRVRTISDGGGRSIGSVSSLEGFLTPQRKFGKEASCDEVGGQSRRSPSVFSMCCESCSVDPYFINSENVDLSLNDFSMNNKDLHHSPSPSVLDGGMDDALYAQLEQAMAEVANAKHDLYQETSKRVKAERDCIDAIRKAKAIENLHQEELKLRKEQEEEVQKANEELDDMKRQINKVYEELQLALDQKLSLENRIASTELIIKELEQKNISADELSQKYKNEVDDLQMRRDNALGEAEELRRKQEEASSTHWLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFRGILRHTEVAIKMLSPDSTQGPVEFQQEIEVLSKLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRVAAELCSALIFLHSSKPHSIAHGDLKPGNILLDANFVSKLGDFGICRILSCQEGSSSSTTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGIILLRLITGKPALGIAKEVQYALDSRKLKSILDPLAGDWPFMLAEELVRLALRCCEMNRKSRPDFYPDVWRILEPMRASCGGTNTFQLGSQGKCQPPPYFICPISLEVMQDPHVAADGFSYEAEVIREWLKNGRHVSPRTNSKFAHHHLIPNHSLRHAIQDWLQTH 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00769 885 SMART Ubox_2 818 881 IPR003613 GO:0004842|GO:0016567
Phco1g00769 885 Pfam Protein kinase domain 531 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00769 885 SUPERFAMILY RING/U-box 812 885 - -
Phco1g00769 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Phco1g00769 885 MobiDBLite consensus disorder prediction 225 244 - -
Phco1g00769 885 FunFam receptor-like protein kinase FERONIA 491 599 - -
Phco1g00769 885 ProSitePatterns Protein kinases ATP-binding region signature. 533 554 IPR017441 GO:0005524
Phco1g00769 885 MobiDBLite consensus disorder prediction 1 23 - -
Phco1g00769 885 SMART serkin_6 527 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00769 885 Gene3D Transferase(Phosphotransferase) domain 1 600 803 - -
Phco1g00769 885 Coils Coil 394 506 - -
Phco1g00769 885 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 67 168 - -
Phco1g00769 885 SUPERFAMILY Protein kinase-like (PK-like) 504 785 IPR011009 -
Phco1g00769 885 CDD RING-Ubox_WDSUB1-like 816 871 - -
Phco1g00769 885 Gene3D Phosphorylase Kinase; domain 1 496 599 - -
Phco1g00769 885 PANTHER OS02G0152300 PROTEIN 48 880 - -
Phco1g00769 885 ProSiteProfiles Protein kinase domain profile. 527 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00769 885 ProSiteProfiles U-box domain profile. 814 885 IPR003613 GO:0004842|GO:0016567
Phco1g00769 885 Gene3D HUPs 48 194 IPR014729 -
Phco1g00769 885 Pfam U-box domain 816 885 IPR003613 GO:0004842|GO:0016567
Phco1g00769 885 Coils Coil 357 377 - -
Phco1g00769 885 CDD STK_N 47 200 - -
Phco1g00769 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 813 885 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00769 Phco-Chr1 7121964 7127031 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phco1g00769 Pkinase 2.5e-41 CL0016