Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00762 ATGCAATCCGGCGGTGGGTCCGGCCGGAACCCCGGAGTGGGGCGGGCGGTGACGTCGTCGGCCGCGGCGTCGCCGACTTCTTCGTCTTCGGCGTCGCAGTTGGGGTTGGACTCTATGCAGCATCAGCAGCAGCAGCAGCAGCAACAGCAGATGGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAATGAAGCGTTTTTAGCTTATCAAGCAGGGCTTCAGGGGGTATTTGGGAGTAACAGTTTCTCATCTCCTAGTGCAATGCAACTGCCTCAGCAGTCTCGGAAATTGCATCTTGGTTCCAACCAAGAAACCCAGCTAAGGGGTCAAGGTATTGAGCAGCAAATGCTAAATCCTGTCCATCAAGCATACCTTCAATATGCACTCCAGGCTGCACAACAAAAGTCTAATTTGGGAATGCAGTCACAGCAGCAAACTAAAATGGGAATGCTGAACTCTGCATCTCTCAAGGAACAGGAGATGCGTATGGGAAATTTGAAAATGCAGGAAATTATGTCTATGCAGGCAGCGAATCAAGCTCAAGGATCATCCTCTAGGAATTCATCTGAGCTTGTTGCTCGTGGGGACAAGCAAATGGAGCAAGGACAACAAATAGCACCTGATCAGAAGAGTGAAGGAAAGCCTTCTACCCAGGGACCAACTATTGGACATTTAATTCCTGGGAATATGATAAGACCCCCAATGCAAGCACCAGAAACACAGCAGGGCATCCAAAATGTTGTAAACACCCAGATTGCCGTATCTGCACAATTGCAGGCTATGCAGGCATGGGCACGTGAACGTAATATTGATTTATCACATCCTGCAAATGCGCACTTAATGGCACAGCTCATTCCACTGATGCAGTCAAGGATGGTCTCTCAATCAAAGGTCAATGAGAGCAACATTGGTACTCAGTCATCACCTGTCCCTGTTTCAAAGCAGCAGGTTACTTCTCCAGCAGTTGCAAGTGAGAGTTCAGCACATGCCAATTCATCGAGTGACATGTCTGGGCAGTCAGGTTCTTCAAAAGCCAGGCAGACAGTTCCACCCAGCCATCTTGGCTCAACAACAACTGCTGGTATAGCTGGTAACTCCAGTGACATGGCAACACAACAATTCAGTGTTCACGGTAGAGAATCTCAAACCCCTCTGAGGCAGCCAGTAGCACTTGGAAATCGAATGCCCTCTATGCATTCTCAGCAGTCTTCTGCCAACACGAACTTAGGTGCAGACCATCCATTGAATGGAAAAAATTCATCATCTGGTCCAGAACCTCCTCAAATGCAGTACATGAGGCAGTTAAACCAATCTGCTTCTCAGGCTGGAGGTCCATCGAATGAAGGGGGTTCAGGAAATCTTTCCAAATCTCAAGGACCACCAGCTCAGATGCCTCAGCAGCGAACCGGTTTTACAAAACAACAGCTACATGTGCTAAAAGCACAGATACTGGCATTTAGGCGGCTGAAGAAAGGGGAAGGTACTCTGCCTCAAGAACTTCTTAGGGCTATTGTTCCACCATCTCTTGAGACACAGGCACAACAGCCTAATCATGCTGTAGGAGGACATAACCAAGACAAATCTACTGGAAATATTGTGGCAGAACAAGCAAGCCACATTGAATCCAATGCCAAGGAGTCGCAGTCTGTCCCTGCTATTAATGGTCAAAGTTCTTTAAAGCAGGAATCATTTGCCAGAGATGAGAAATCCTTCATACCCCCAGTCCATGCTCAAGCTGTTGCACCACCTGTGTCAAAGGAATCTGCTCCAACATTATCTGCTGGAAAGGAAGAGCAGAAATCAGTTGGATCCTCTGTTAAGTTGAACCAGGACAGTGAACGTGGCAACAATACTACTACTGTTAGAAATGAGTTAGCATTAGATAGGGGAAAGGCTATTGTGTCACAGGCTCCTGTATCTGACGCAATGCAAATTAAGAAACCTGCACAAACTAGCACTGTTTCCCAGCCAAAGGATGTGGGATCGACTAGAAAATATCATGGACCTTTATTTGATTTTCCTTTCTTTACTAGGAAACATGACTCTTTTGGTTCATCAATGATGCTAAATAACAACAATTTGTCACTGGCATATGATGTCAAGGATCTTCTTTTTGAGGAAGGAATGGAAGTACTTAACAAGAAAAGGACAGAAAATTTAAAGAAGATCGAAGGTTTATTGACAGTAAACTTAGAGAGGAAAAGAATTAGGCCCGATCTTGTTTTGAGGCTGCAAATCGAAGAGAAAAAGCTTCGCCTTGTAGATCTTCAGGCACGCTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGAAAGTTTGTTAGGCTGTGTGAACGTCAGCGCATGGAGCTTGCTAGACAAGTGCAGGCATCTCAGAGAGCAATCAGGGAGAAGCAACTCAAATCAATATTTCAGTGGCGCAAGAAGCTGCTTGAGGCTCACTGGACCATCCGTGATGCCCGTACCGCCCGCAACAGGGGGGTTGCAAAATATCATGAGAAGATGTTGCGGGAGTTCTCAAAACGGAAAGATGATGACAGAAACAAAAGGCTGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTACTGGAGCAGCAAACTAGCATCCCTGGTGATGCTGCAGAGAGATACGCTGTTCTTTCAACTTTCTTAAGCCAGACTGAAGAGTATCTACACAAGTTAGGAAGTAAGATAACGGCTGCTAAAAATCAACAGGAAGTGGAGGAAGCAGCAAAAGCTGCTGCAGCTGCTGCAAGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGGAATCGCTTTCTGGAGATGAATGCTCCTAGAGACAGTTCGTCTGTCAACAAATATTACAACCTTGCTCATGCTGTGAGTGAAACAGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTGAGAGATTATCAGCTTGTTGGTTTGCAATGGATGCTTTCGTTGTATAACAACAAGTTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCTTACTTAATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTACCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGCTTTATACTTGGTTGCCATCTGTTTCTTGCATTTTTTATGTTGGAAGCAAGGATCACCGGTCAAAATTATTTTCCCAAGAGGTTTGTGCTATGAAATTTAATGTCCTCGTGACTACTTACGAGTTCATCATGTATGACCGGTCAAAACTATCAAAAATTGACTGGAAGTATATCGTAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCTGTTTTAGCTCGCGACCTTGATAGATATCGTTGTCAAAGACGTCTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAAGAACTCTGGTCTCTCTTAAATTTACTTCTTCCTGAAGTTTTCGATAATAGGAAAGCCTTTCATGATTGGTTCTCTAAACCATTTCAAAAGGAAGGTCCCACTCAAAATGTAGAGGATGATTGGCTTGAGACAGAGAAAAAAGTTATTATTATCCACCGACTTCATCAGATTCTGGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCCCTTCCACCAAAGGTTTCCATAGTTCTAAAATGTAAAATGTCAGCTGTCCAAAGTGCCATTTATGACTGGGTCAAATCGACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGCAAGCTTCATAGGAATCCGTCATATCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGTAAGACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAGTGACCTATCCAAGGATTTCATTGTAAGATCTTGTGGAAAATTGTGGATCCTGGATAGGATTCTCATAAAACTTCAGAGAACTGGGCATCGAGTTCTGCTTTTCAGTACCATGACAAAACTTCTAGATATCTTGGAAGAATATCTACAGTGGCGAAGACTTGTTTACAGAAGAATTGATGGGACAACAAGTTTGGAAGACCGTGAATCAGCTATAGTGGACTTCAATAGCCCTGATTCAGACTGTTTCATCTTTCTGCTTAGTATTCGAGCTGCTGGACGAGGGCTTAACCTTCAGTCTGCTGACACGGTTGTCATCTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCACATCGTATTGGACAGACAAGAGAAGTGAAAGTTATATATATGGAAGCTGTTGTTGACAAAATCTCTAGTCATCTGAAGGAGGATGAGCTGAGAAGTGGAGGCACTGTTGATATGGAGGATGAACTTGCAGGTAAGGACCGCTACATTGGGTCCATCGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGGTTTGATCAAAGAACAACACATGAAGAGAGGCGATTGACATTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCCAGAAGTAAAGAGGAAATTGAACTGTTTGATCAAATGGATGATGAATTCGATTGGATTGAAGAGATGACACGATACGATAATGTGCCCAAGTGGCTTCGAGCCAATACAAGAGAAGTAAATGCTGCTGTTGCTGCTCTATCAAAAAGACCATCAAAGAACACTTTATTGGGTGGTAATATTGCCATGGAATCAAGTGAATTTGGTTCTGAAAGAAAAAGAGGACGACCCAAGGGAAAAAAGCATCCTAATTATAAAGAGTTGGATGATGAAATTTTGGAATACTCTGAAGTAAGCTCTGATGAAAGAAATGGATATGCACACGAAGAAGGGGAAATAGGAGAATTTGATGATGATGGGTATAGTGTGGCTGATGGAGCTCAGACTATTGATAAAGATCAATTGGAAGATGGTTTGCTTGGTGACGCTAGATTTGAATTTCCTCAATCCTTAGATAGCGCTAGAAATACTCAGATGGTTGAAGAAGCTGGTTCCTCAGGGTCATCCTCGGACAGTCAAAGATTGACACAGGTGGTATCACCATCAGTCTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATGCCCGGCCAGGTTCCGTTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCAGTATCTGGTGATTCTCACATGGACCATCAACAGTCTGGAAGTTGGATTCATGATCGTGAGGAAGGTGAGGATGAGCAAGTTCTGCAGAAACCAAAGATTAAACGCAAACGCAGTCTTCGTGTTCGACCCCGACATCCCACTGAAAGACCTGAAGAAAAATCTGGTAGTGAAATGACATCTCATTTGGCAGTCCAAGCAGACCATAAATATCAAGCACAACTTAGGACTGACCCAGAATCCAAAGCTCTTGGTGACTCAAATGCCAGCAGGCATGAACAAAGCACACCATCATTAAAAAATAAACGAACTTTGCCTTCAAGGAGAGTAGCCAATACATCCAAATTGCATGGATCACCGAAGTCTAGTCGGTTGAATTGCATGTCTTTACCTTCACAAGATGGTGGTGAACACTCCAGAGAAAGCTGGGAAGGGAAACCTATTAGTGCTAGTGGATCTTCAGCTCATGGCACTAAGATGACTGAAATTATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGCCATGAGATTGTACCGTTGTTAACGGATTTGTGGAAGAGGATTGAAAATTCTGGAAACAGCCTGTTAGATCTACGAAAAATTGATCAACGAATTGATAAATTTGAGTATAATGGAGCAACAGAGCTCGTATTTGATGTGCAGTTCATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCACATGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCCTTTCCTGATACGGACTTTCGGGAAGCAAGAAGTGCACTTTCTTTCTCCGGTCAAGCTGCTACTGGTACAGTAGCATCCCCAAGGCAGGCGTCTGTTAGCCAAAGCAAGAGGCACAGGCTGATAAATGAAATGGAAACTGAGTCATACCCTTCACAGAAGTCACTGCAACGTGGATCAGCTTCTAGTGGTGAAAACAACAGGATTAAAGTCCATTTGCCACAGAGGGAATCAAGAACTGGAAGCGGTGGGGGCAGCAGCACCAGGGAGCAACCTCAGCAGGAGGATTCTTCACTGCTCGCTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGAGAAATCTCTGGCGAAACCCAAGACTGGTCCTGTTTCACCATCTAGCATGAGAAGTCCAGGGTCATTGAAGGATGCTAGATTAACTCAACAGGCTTCCCATGCACAAGGGTGGGCTGGGCAGCCATCTCAACAACCGAATGGATCTGGTGGGTCAGTTGGCTGGGCAAACCCTGTAAAGAGACTAAGAACAGATTCTGGGAAGAGAAGACCAAGCCATACATAG 6669 0.4377 MQSGGGSGRNPGVGRAVTSSAAASPTSSSSASQLGLDSMQHQQQQQQQQQMGSRQSFQQQLLRKPEGNEAFLAYQAGLQGVFGSNSFSSPSAMQLPQQSRKLHLGSNQETQLRGQGIEQQMLNPVHQAYLQYALQAAQQKSNLGMQSQQQTKMGMLNSASLKEQEMRMGNLKMQEIMSMQAANQAQGSSSRNSSELVARGDKQMEQGQQIAPDQKSEGKPSTQGPTIGHLIPGNMIRPPMQAPETQQGIQNVVNTQIAVSAQLQAMQAWARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESNIGTQSSPVPVSKQQVTSPAVASESSAHANSSSDMSGQSGSSKARQTVPPSHLGSTTTAGIAGNSSDMATQQFSVHGRESQTPLRQPVALGNRMPSMHSQQSSANTNLGADHPLNGKNSSSGPEPPQMQYMRQLNQSASQAGGPSNEGGSGNLSKSQGPPAQMPQQRTGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLETQAQQPNHAVGGHNQDKSTGNIVAEQASHIESNAKESQSVPAINGQSSLKQESFARDEKSFIPPVHAQAVAPPVSKESAPTLSAGKEEQKSVGSSVKLNQDSERGNNTTTVRNELALDRGKAIVSQAPVSDAMQIKKPAQTSTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMLNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLTVNLERKRIRPDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAIREKQLKSIFQWRKKLLEAHWTIRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVSETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYTWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRKLHRNPSYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFIVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHLKEDELRSGGTVDMEDELAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDEFDWIEEMTRYDNVPKWLRANTREVNAAVAALSKRPSKNTLLGGNIAMESSEFGSERKRGRPKGKKHPNYKELDDEILEYSEVSSDERNGYAHEEGEIGEFDDDGYSVADGAQTIDKDQLEDGLLGDARFEFPQSLDSARNTQMVEEAGSSGSSSDSQRLTQVVSPSVSSQKFGSLSALDARPGSVSKRMTDELEEGEIAVSGDSHMDHQQSGSWIHDREEGEDEQVLQKPKIKRKRSLRVRPRHPTERPEEKSGSEMTSHLAVQADHKYQAQLRTDPESKALGDSNASRHEQSTPSLKNKRTLPSRRVANTSKLHGSPKSSRLNCMSLPSQDGGEHSRESWEGKPISASGSSAHGTKMTEIIQRRCKNVISKLQRRIDKEGHEIVPLLTDLWKRIENSGNSLLDLRKIDQRIDKFEYNGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFREARSALSFSGQAATGTVASPRQASVSQSKRHRLINEMETESYPSQKSLQRGSASSGENNRIKVHLPQRESRTGSGGGSSTREQPQQEDSSLLAHPGELVVCKKRRNDREKSLAKPKTGPVSPSSMRSPGSLKDARLTQQASHAQGWAGQPSQQPNGSGGSVGWANPVKRLRTDSGKRRPSHT 2222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00762 2222 Coils Coil 751 775 - -
Phco1g00762 2222 SMART QLQ_2 474 511 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco1g00762 2222 SMART bromo_6 1926 2035 IPR001487 GO:0005515
Phco1g00762 2222 MobiDBLite consensus disorder prediction 301 370 - -
Phco1g00762 2222 Gene3D - 803 876 - -
Phco1g00762 2222 Gene3D - 992 1240 IPR038718 -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 1850 1905 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 1713 1746 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 2050 2070 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 2157 2200 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 2078 2101 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 547 566 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 396 476 - -
Phco1g00762 2222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1332 1509 IPR001650 -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 1622 1646 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 597 622 - -
Phco1g00762 2222 ProSiteProfiles QLQ domain profile. 475 511 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco1g00762 2222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1235 1573 IPR027417 -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 1781 1802 - -
Phco1g00762 2222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1231 IPR027417 -
Phco1g00762 2222 SMART helicmild6 1358 1442 IPR001650 -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 207 223 - -
Phco1g00762 2222 SMART ultradead3 997 1186 IPR014001 -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 1849 1926 - -
Phco1g00762 2222 CDD SF2_C_SNF 1327 1452 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 547 622 - -
Phco1g00762 2222 Pfam SNF2-related domain 1004 1308 IPR000330 GO:0005524|GO:0140658
Phco1g00762 2222 Coils Coil 1548 1568 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 180 245 - -
Phco1g00762 2222 FunFam ATP-dependent helicase BRM 992 1240 - -
Phco1g00762 2222 Gene3D - 1918 2046 IPR036427 GO:0005515
Phco1g00762 2222 MobiDBLite consensus disorder prediction 2111 2130 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 2138 2154 - -
Phco1g00762 2222 SUPERFAMILY Bromodomain 1974 2037 IPR036427 GO:0005515
Phco1g00762 2222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1013 1178 IPR014001 -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 180 199 - -
Phco1g00762 2222 Pfam QLQ 476 509 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco1g00762 2222 Gene3D - 1241 1451 IPR027417 -
Phco1g00762 2222 PANTHER SNF2/RAD54 HELICASE FAMILY 714 1716 - -
Phco1g00762 2222 Pfam Helicase conserved C-terminal domain 1331 1442 IPR001650 -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 1767 1831 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 1 60 - -
Phco1g00762 2222 FunFam ATP-dependent helicase BRM 1241 1451 - -
Phco1g00762 2222 FunFam Brahma1 1928 2045 - -
Phco1g00762 2222 MobiDBLite consensus disorder prediction 2050 2222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00762 Phco-Chr1 7022507 7034814 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco1g00762 SNF2_N 2.3e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00762 1 7022507 7034814 Phco1g00762 1 7022507 7034814 ECH
Phco3g02597 3 52563046 52576033 Phco1g00762 1 7022507 7034814 PCT