LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco1g00760	ATGTCCATGGCAGGGCGGTTGCTGTTCGACGGTGGTGTTCGCGAAGAAGATAGTGGTGGCATTGTTGGAGGCTCGAACGACAATTCTTTGTGCCGTTTCGAGAGGTTGTTTGCAGAGTTCTTTAGTGAGATCTGTGTGTTTAATTGCGTTTTGCATTATTCTCCAATGCTGGCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAATGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTTGGGTCCTCTGTTGAGTTGCTTTACAGTAGGTACTTGAGTGCTTTAGATTCATGGATGAAGAAAATTGCTGAGAGTAAGGTGTCTCCCGAGTTTGGTGTGGTGGATAATAGGGATAAGTTCGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGTGGAAGGGTTGTTGTCCGGTTGTGCCGAGGATAGGGTGGTTGTGGCTGGAGAAGACGATCACAACTTGGATGGGAGGGAGTTCTGCGGTGCTAATGGGGTGAAAGGTAACGGTGATGAAGGAGGTGAACACAGAGAATGTTCTGACTCGGAGCTGCCGGACCATGACATGAATGAGGCGGTTCTTGGAAACTCGGGTAAGGGAAATGATGCAATGGGAGGGCAGGGAGGGTTTGACGGAGGGAAAATGTCTGAAGAGCTGGCTGTGGATGTATTGGATGGGGCTAACAACAGTGGGGCTGGATTGGTGAGTGGAGGTACGAAGGGTGACGACAGTGATGATAAGGGCTTAGTGTTGGATGCATCTGGTGGTAGTAGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTATTGGATTCATCTAGTGATGATAGTGATAGTCCTAGTCGTAAGAGGATGCGAGAGCCTGCAATGGATATGCTGAGTTGGGTTACTGCTGTTGCAAAGAATCCTAGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCGAAGTGGAAGTCTTATAGTAGTCAGGAGGTGTGGAAGCAGGTGCTGTTTTTTCGGGAGGCAGTGTTTTACAGAAGAGGTCCTGAGCCAAGCAATGAACAACGTAATTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCAAGTTGGGACAAACTACAATCTCAGAGACAGGTTGAAACGTGACAAGAAGCTTTTATTTGGGAAATATACATCTGTGCGAAGCTCTTCTGATTCATCTCTGGAAACTGAGAACAGGACACCAAGTCCTCGTACTGAAGGTCAATCTGAGTTGTTTGATTCCTCAGATGCACATTCAGGTCTTGACAAATGTGCAACAGTGCGCATTCCTTTGGGGGCAAATCATCAAGCTGAAATACCAGAATGGACTGGTGTGACTTTTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGGAAGCAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCTCAGAAGAAGGTTCTGTTGAGTGTGTAAGATTCCACATTTCAGAGAAAAGGGCTAAAGTTCAGCTGGAATTGGGTAAAGCATTTTTTGATTGGAACTTTGATCGGGTTGGTGAAGATGTTAGACTAATGTGGACGAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTACAAGCAAACCCTCCATCACCTGAGAAATATTTCTGGGACTATATCTTTAGGGCTTTTCCTGATAAAAGCAGGGAAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAGCGCAGAGGATATCAGAATAGGCATACACCCGATGACATTGATAGTGATGACAATGACGATGAAGCTGGACCACTGAGGAATGTTTTTGGACATCAGATAAAGAATTCTGGACATCAGATGCAGAGTTCTCGAGGCTCCATCTTATTAACCCCCAAAAAGTCACATAAGAAGGGAAAATAG	1989	0.46	MSMAGRLLFDGGVREEDSGGIVGGSNDNSLCRFERLFAEFFSEICVFNCVLHYSPMLADGQDVDLYRLFLVVRGKGGYDAVCNGKLWDSVGEESGMGVSVGSSVELLYSRYLSALDSWMKKIAESKVSPEFGVVDNRDKFGRRLMELQAEVEGLLSGCAEDRVVVAGEDDHNLDGREFCGANGVKGNGDEGGEHRECSDSELPDHDMNEAVLGNSGKGNDAMGGQGGFDGGKMSEELAVDVLDGANNSGAGLVSGGTKGDDSDDKGLVLDASGGSSDGDSSGHKRKREGSVLDSSSDDSDSPSRKRMREPAMDMLSWVTAVAKNPSDPEVGSIPEKSKWKSYSSQEVWKQVLFFREAVFYRRGPEPSNEQRNWQNQKMHPCLYEDQVGTNYNLRDRLKRDKKLLFGKYTSVRSSSDSSLETENRTPSPRTEGQSELFDSSDAHSGLDKCATVRIPLGANHQAEIPEWTGVTFESDSKWLGTRIWPQEAVNTRLIERDPIGKGRQGSCGCSEEGSVECVRFHISEKRAKVQLELGKAFFDWNFDRVGEDVRLMWTKEEEKKFEDVVQANPPSPEKYFWDYIFRAFPDKSREDLVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDDEAGPLRNVFGHQIKNSGHQMQSSRGSILLTPKKSHKKGK	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco1g00760	662	ProSiteProfiles	ARID domain profile.	27	120	IPR001606	GO:0003677
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	183	232	-	-
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	252	309	-	-
	Phco1g00760	662	Coils	Coil	661	662	-	-
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	610	662	-	-
	Phco1g00760	662	CDD	ARID	32	116	-	-
	Phco1g00760	662	Gene3D	-	31	128	IPR036431	GO:0003677
	Phco1g00760	662	Pfam	ARID/BRIGHT DNA binding domain	52	114	IPR001606	GO:0003677
	Phco1g00760	662	SMART	bright_3	35	121	IPR001606	GO:0003677
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	188	206	-	-
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	415	443	-	-
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	279	309	-	-
	Phco1g00760	662	SUPERFAMILY	ARID-like	36	123	IPR036431	GO:0003677
	Phco1g00760	662	SMART	ELM2_2	454	504	IPR000949	-
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	635	652	-	-
	Phco1g00760	662	MobiDBLite	consensus disorder prediction	415	440	-	-
	Phco1g00760	662	SMART	ARID_2	31	116	-	-
	Phco1g00760	662	CDD	SANT	553	600	IPR001005	-
	Phco1g00760	662	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	26	659	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco1g00760	Phco-Chr1	6982724	6986052	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Phco1g00760		ARID	2.5e-08	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco3g02599	3	52607652	52611134	Phco1g00760	1	6982724	6986052	PCT