Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00737 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGGTATCAGGAAGGACAGGACCCCACCCTCTGCCCCTGGCAAGGATCAAGAAGATCATGAAGAAGTCAGGGGATGATGTTAAAATGATATCAGGGGAGGCTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTTTGCACAAAGAGGACTTAACCTCTGCAGTTATAGCCACTGATCTATTTGACTTTTTGATCACTTTGGTCTCCAATTCTGACAGCCATCCACTTGGTGTCCCCACCACTACCATGGAGAGTCTGACCATGAAGGAGCAGCAATGCATTACACTATTATTCGTACCATGTAACAACAATGAAAACATGTTCATGATAGCAACGCATTACATCTGTTTTTAA 450 0.4467 MRQAGAYSGLLCGGVSGRTGPHPLPLARIKKIMKKSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAVIATDLFDFLITLVSNSDSHPLGVPTTTMESLTMKEQQCITLLFVPCNNNENMFMIATHYICF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00737 149 FunFam Nuclear transcription factor Y subunit C 15 102 - -
Phco1g00737 149 SUPERFAMILY Histone-fold 18 96 IPR009072 GO:0046982
Phco1g00737 149 Gene3D Histone, subunit A 16 102 IPR009072 GO:0046982
Phco1g00737 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 87 IPR003958 -
Phco1g00737 149 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00737 Phco-Chr1 6752828 6754434 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco1g00737 CBFD_NFYB_HMF 7.4e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00737 1 6752828 6754434 Phco1g00737 1 6752828 6754434 ECH