Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00722 ATGGTGTCGGTGAACCCAAACCCCGCGCAAGGCTTTTACTTCTTCGATCCTTCCAACATGACCCTTCCCGGCGTTAATTCTCTTCCGCCGCCACCGCCGCCGCCGCAGACTCCCGCCGCTTCCGTCTCCATGGAGGATCCAAATAAGAAGATCCGGAAACCCTACACAATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAATTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACTGTCATCCAGATAAGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTTCCTCCTCCTCGACCAAAGAGAAAAGCTACTCACCCATACCCTCAAAAGGCTCCTAAAATCACTCCTCCTGTATCCCAAGTTATGGGCCCACTGCAACCTTCATCTGCTTTCATTGAACCTGCATATATTTATAGCCCGGATTCTTCATCTGTTCTGGGAACTCCAGTAACCAACATGCCTTTGTCGTCTTGGAACTATAATGCTAAACCACCAGTCAATGTGCCACAAGTGACTAGAGATGACATGGGATTGACCAGAGCGGCACAAACTGTTCCTCTCAACTGTTGCTATAGCAGTAGTAATGAGAACACCCCTCCAACATGGTCAAGTAGCAAAAAACATCATCAAGGTGGCCAGGGCAAGCCAATTAAAGTAATGCCAGATTTTGCTCAAGTCTACAGCTTCATTGGCAGTGTTTTTGATCCAAATTCAACTAATCACCGACAGAAACTAAGACAGATGGACCCAATAAATGTGGAAACGGTATTGTTGTTGATGAGAAATCTCTCGGTCAATTTAATGAGTCCAGAGTTTGAGGATCATAAGAAGCTGCTTTCATCCTATGATATCCATTCTGATGAGTCGAAGCTTGATAATATTTGCAGCAAATCCCTCACTGATAAATCTGAGAGTGCTATTCTGTCTGCGTAA 1005 0.4468 MVSVNPNPAQGFYFFDPSNMTLPGVNSLPPPPPPPQTPAASVSMEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPPVSQVMGPLQPSSAFIEPAYIYSPDSSSVLGTPVTNMPLSSWNYNAKPPVNVPQVTRDDMGLTRAAQTVPLNCCYSSSNENTPPTWSSSKKHHQGGQGKPIKVMPDFAQVYSFIGSVFDPNSTNHRQKLRQMDPINVETVLLLMRNLSVNLMSPEFEDHKKLLSSYDIHSDESKLDNICSKSLTDKSESAILSA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00722 334 SMART sant 60 108 IPR001005 -
Phco1g00722 334 MobiDBLite consensus disorder prediction 112 145 - -
Phco1g00722 334 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Phco1g00722 334 Gene3D - 64 111 - -
Phco1g00722 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Phco1g00722 334 CDD SANT 63 106 IPR001005 -
Phco1g00722 334 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Phco1g00722 334 PANTHER SWI/SNF COMPLEX-RELATED 37 292 - -
Phco1g00722 334 MobiDBLite consensus disorder prediction 220 239 - -
Phco1g00722 334 MobiDBLite consensus disorder prediction 220 234 - -
Phco1g00722 334 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Phco1g00722 334 MobiDBLite consensus disorder prediction 24 40 - -
Phco1g00722 334 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Phco1g00722 334 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Phco1g00722 334 MobiDBLite consensus disorder prediction 23 56 - -
Phco1g00722 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00722 Phco-Chr1 6642331 6648684 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco1g00722 Myb_DNA-binding 2.8e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00722 1 6642331 6648684 Phco1g00722 1 6642331 6648684 ECH
Phco1g00722 1 6642331 6648684 Phco3g02619 3 52833640 52838801 ECH
Phco3g02619 3 52833640 52838801 Phco1g00722 1 6642331 6648684 PCT