Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00647 ATGGGAAACAGTGAGGAAGGGAAATCTGTTAAAACTGGAAGTCCTTCTTCACCAGCTACAACTGAACAGACCAATCAAACAAACCAGCCTAACTTTCATGTCTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCGAGAGTCAACATTCCTCCATACTTCAACTCGGCTGTGGCTTCTGGTCATGCTCCACACCCATACATGTGGGGTCCGCCACAGCCTATGATGCCACCTTATGGGCCACCATATGCAGCATTTTATTCTCCTGGAGGGGTTTATACTCACCCTGCAGTTGCTATTGGGCCACATTCACACGGTCAAGGAGTTCCATCTCCACCTGCTACTGGGACTCCTTCAAGTGTAGATTCACCAACAAAATTATCTGGAAATACTGATAAAGGGTTAATGAAGAAATTGAAAGGGTTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCTGAGAGTGCTGAGCTTGGAGCTGAAAACAGGCTGTCGCAGAGTGTGGATACTGAGGGTTCTAGCGATGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAATGAAAAGAAGCCGAGAGGAAACATCAACCACTGATGGAGAAGGGAAAACTGAGACACAAGATGGGCCAGTTTCCAAAGAGACTGCATCTTCAAAAATGATTATGTCTGCTACACCAGCAAGTGTTGCAGGAAAGTTAGTTGGTCCTGTAATTTCTTCTGGTATGACCGCAGCACTGGAGCTTAGGAAACCTTTGACTGTTCATTCTAAGGAAAATCTCACGAGTGCCCCACAGCCTTGTGCAGCTGTGCCTCCTGAAGCTTGGGTACAGAATGAGCGTGAGCTGAAACGGGAGAGGAGGAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCACGAAAAGTTGAGATGTTAACTGCTGAAAATGTGTCACTGAAGTCAGAAATAACTCAATTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGAGAAATACTCATCTGGGACAAAGGGAAGAGATAATTTTGGACAGCATTGACAGCAAGAGGTCTACACCTGTAAGTACTGAAAATTTGCTATCAAGAGTTAATAATTCCAGTTCTAATGATAGAAGTGCAGAGAATGAGAGTGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTTGCTGCAGGATGA 1281 0.4504 MGNSEEGKSVKTGSPSSPATTEQTNQTNQPNFHVYPDWAAMQYYGPRVNIPPYFNSAVASGHAPHPYMWGPPQPMMPPYGPPYAAFYSPGGVYTHPAVAIGPHSHGQGVPSPPATGTPSSVDSPTKLSGNTDKGLMKKLKGFDGLAMSIGNCNAESAELGAENRLSQSVDTEGSSDGSDGNTAGANQTKMKRSREETSTTDGEGKTETQDGPVSKETASSKMIMSATPASVAGKLVGPVISSGMTAALELRKPLTVHSKENLTSAPQPCAAVPPEAWVQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITQLTEGSEQMRMENSALREKLRNTHLGQREEIILDSIDSKRSTPVSTENLLSRVNNSSSNDRSAENESDFCENKPNSGAKLHQLLDTNPRADAVAAG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00647 426 CDD bZIP_plant_GBF1 286 334 IPR045314 GO:0003700|GO:0006355
Phco1g00647 426 Pfam bZIP transcription factor 281 343 IPR004827 GO:0003700|GO:0006355
Phco1g00647 426 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Phco1g00647 426 MobiDBLite consensus disorder prediction 370 393 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 1 32 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 189 203 - -
Phco1g00647 426 SUPERFAMILY Leucine zipper domain 284 339 IPR046347 GO:0003700|GO:0006355
Phco1g00647 426 Pfam Disordered region downstream of MFMR 132 260 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 279 309 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 204 222 - -
Phco1g00647 426 Coils Coil 308 328 - -
Phco1g00647 426 SMART brlzneu 281 345 IPR004827 GO:0003700|GO:0006355
Phco1g00647 426 MobiDBLite consensus disorder prediction 161 188 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 259 309 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 370 426 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 161 222 - -
Phco1g00647 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 283 346 IPR004827 GO:0003700|GO:0006355
Phco1g00647 426 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 396 IPR044827 GO:0003700|GO:0006355|GO:0043565
Phco1g00647 426 FunFam G-box binding factor 3 284 339 - -
Phco1g00647 426 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 288 303 IPR004827 GO:0003700|GO:0006355
Phco1g00647 426 MobiDBLite consensus disorder prediction 110 130 - -
Phco1g00647 426 Gene3D - 284 337 - -
Phco1g00647 426 MobiDBLite consensus disorder prediction 102 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00647 Phco-Chr1 5875077 5878241 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco1g00647 MFMR_assoc 1e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00647 1 5875077 5878241 Phco1g00647 1 5875077 5878241 ECH
Phco11g01265 11 9513280 9519256 Phco1g00647 1 5875077 5878241 PCT