Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00625 ATGTGGAAAATGCTGCACCCAACCACTTCTACACTCACCACCACAACCCTCCTCAACCAACCCTTTCTCCCCACATCAACCTCCGCCAACCCCCTCGATGTCGCCGTCGTCGCCGTCTTCGCTGCCGCCTGCGCCCTCCTCCTCCTCCTCGCCCTCTCTGCCCTTCTCTACTGTCTCCGCAGACGCAAGACCTTCTTCGCTGACCCCACCGTCAACTGCTTTCCCTGCGATGCCGCCGCCGCTGCCTATCGGAAAGCGAGGAACGCCACGGACTCGCCGGTGCTCCAGCCCCTGCTCGCGCGACAAGCCTCGCCGGCCACGGTCGACGACGAAGAACAGCAACTCTGCTCGCTGAGAGGGAAGATTACAGAATCCGAAGTTGTATGTGAACCAGAGGAATCAAATTCTGAAGATGATGTTGGAGTATCTGATAATGACTTTGAAACACAGATTTTACTACATTTTCTACTTTCACTCAGAGAAGAAAAGAAGAAACAGGCAACCAAGTTGGAAGAAGTGCTGAATTTCTTGAATGAAGATATTAAGGAGGTAGAAAGAAGCTACTCACTAGGGACAGATTCAGCATTTCCTTTGGCACTAACGGAAAATCCTGAAGTGAGAGGAAACGGTGCACACTGTCAAGATTTTTCCAGTTCAGACATTAGTAGATTGATTCGAAGGTCATTTGCTGATGAAGAAAGATTATTGAGTAATATAAATCAGCTAGAGAGTTCATACTTTTCTGCAAGATCCCAAGTCCTGCCGAAAGAGGCTTCATCTGCTTCAAGCAATGATAAAAAAGTGATGGAAAGTGAATGGAGGCATGTAGAGACTGTTGATAAGGAGTCAAGAAGAATTCGGAGTTCTTCTGTTGCTTGTCTAGAATCCTTCTGTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAGGTTTGAAGAGTGTGGCAGATTAAGAAACAGTGATCAGCTTAGTTCTGGCAATATAGTATGTGCTTTAAGCTTTGACCGGGATGAAGATTACATTGCAGCAGCAGGAATTTCAAGGAAAATCAAGATTTTTGACCTCAGTGCTATTTCAAATGATTCTGTTGAAATCCAGTACCCAGTAGTTGAAATGTCAAATGAATCAAAGCTTAGTAGTGTCTGCTGGAACACTTGCATACAAAATCATCTGGCATCTGCTGACTATGGTGGTGAGATTAAGATGTGGGATGCAGGCACTGGTCAGCTTTTATCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACATTTCTCTGTCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGTTCTGTCAAAGTTTGGAATATTAACGAGAGAAATTCTGTGGAAACTATCAGGATGCCTTCCAATATATGCTGTGTTCAGTTCTCTCCTCCATCGACAAATCTTTTATTTTTTGGATCAGCTGATCACAAGGTTTATGGTTATGATCTTCGTCACACTAGAACCCCTTGGTGCTCTTTAGCTGGTCATGGCAAATCTGTGAGCTATATAAAATTTATAGATGCTGAAGCAGTTGTCACTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTAAAGAAAACCAGTTCTTCTGCTTTGTCTTCTGATGCTTGTGTCTTAACCTTTAAAGGGCATAGCAATCAAAAGAATTTCGTGGGATTATCTGTTTCGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCACTGCCAGTGCCAATTGCTACTCATAAATTTGAGTCAATTGATCCCATTTCTGGTCATCCAGATAATGGACAGTTTGTTTCTTGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTAGCCGCCAACTCAGTTGGAATTGTGAAACTATTGCAGATGGTCTGA 1908 0.4382 MWKMLHPTTSTLTTTTLLNQPFLPTSTSANPLDVAVVAVFAAACALLLLLALSALLYCLRRRKTFFADPTVNCFPCDAAAAAYRKARNATDSPVLQPLLARQASPATVDDEEQQLCSLRGKITESEVVCEPEESNSEDDVGVSDNDFETQILLHFLLSLREEKKKQATKLEEVLNFLNEDIKEVERSYSLGTDSAFPLALTENPEVRGNGAHCQDFSSSDISRLIRRSFADEERLLSNINQLESSYFSARSQVLPKEASSASSNDKKVMESEWRHVETVDKESRRIRSSSVACLESFCEGLCKFARYSRFEECGRLRNSDQLSSGNIVCALSFDRDEDYIAAAGISRKIKIFDLSAISNDSVEIQYPVVEMSNESKLSSVCWNTCIQNHLASADYGGEIKMWDAGTGQLLSQYMEHQKRAWSVHISLSDPKMFASGSDDCSVKVWNINERNSVETIRMPSNICCVQFSPPSTNLLFFGSADHKVYGYDLRHTRTPWCSLAGHGKSVSYIKFIDAEAVVTASTDNSLKLWDLKKTSSSALSSDACVLTFKGHSNQKNFVGLSVSDGYIACGSESNEVYCYHKSLPVPIATHKFESIDPISGHPDNGQFVSCVCWRKKSNMLVAANSVGIVKLLQMV 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00625 635 PANTHER PROTEIN SPA1-RELATED 2 121 635 IPR044630 GO:0009640
Phco1g00625 635 PRINTS G protein beta WD-40 repeat signature 433 447 IPR020472 -
Phco1g00625 635 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Phco1g00625 635 PRINTS G protein beta WD-40 repeat signature 517 531 IPR020472 -
Phco1g00625 635 Gene3D - 297 635 IPR015943 GO:0005515
Phco1g00625 635 ProSitePatterns Trp-Asp (WD) repeats signature. 517 531 IPR019775 -
Phco1g00625 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 539 IPR001680 GO:0005515
Phco1g00625 635 Coils Coil 160 187 - -
Phco1g00625 635 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 532 - -
Phco1g00625 635 SMART WD40_4 492 530 IPR001680 GO:0005515
Phco1g00625 635 SMART WD40_4 541 580 IPR001680 GO:0005515
Phco1g00625 635 SMART WD40_4 591 633 IPR001680 GO:0005515
Phco1g00625 635 SMART WD40_4 449 488 IPR001680 GO:0005515
Phco1g00625 635 SMART WD40_4 406 446 IPR001680 GO:0005515
Phco1g00625 635 SMART WD40_4 364 403 IPR001680 GO:0005515
Phco1g00625 635 SMART WD40_4 315 353 IPR001680 GO:0005515
Phco1g00625 635 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 455 IPR001680 GO:0005515
Phco1g00625 635 SUPERFAMILY WD40 repeat-like 325 632 IPR036322 GO:0005515
Phco1g00625 635 Pfam WD domain, G-beta repeat 498 530 IPR001680 GO:0005515
Phco1g00625 635 Pfam WD domain, G-beta repeat 416 446 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00625 Phco-Chr1 5579393 5589928 Tandem