Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00593 ATGTCTATCCTCACTCGTGTTACCCGCCAAAATCCCTCCACCGCCACCTTCCTCGCGCGCCATCTCTCCTCCGCCGCCTCCAAACTCCACGCTTCGTACACTTTCAAACCACCGTCGTCTCTCACTCCCGAGCCCCAATGCGCCAATTCCCCTCCCACCAAGCCCAACCAAAGAAAACCCAAGCCCAAGTACCGGCCTCCTTCCTCTCTCGACCCGGCCGGCCTCAAGCGGGTTCGTTCCAATGACCTGCCCTTCGATTTCCGGTTCAGCTACACGGAGAGCAGCCCGAAGGTGCGGCCCATTGGGCTCAGGGAGCCCAAGTACTCGCCCTTTGGGCCGGGCCGGCTCGACCGGAAGTGGACTGGTGTGTGTGCGCCAGCGGTGGACCCCACGGTGGAGAGCTTAGAGGGTGCGGAGGACCCTAAGTTGGAGGAGCAGAGGAAGAAGAAGAGAGAGATGATTCAAGGAAAACCCCTTACCAGTGACGAGAGAAAGGCATTGGTATCGCAATTTGAGAGAAGCAAAACTAATAGGCATGTCAATCTCGGAAGGGATGGTTTAACTCACAACATGCTGAATGTTATTCAAAATCATTGGAAGTTTGCTGAAGCAGTTAGAATCAAATGCATGGGTGTTCCAACTATGGACATGAAAAATATTTGCACCCAGCTTGAGGACAAAACATTTGGGAAGGTCATCTTCAGACATGGAGGTACACTTATATTATACAGAGGCAGGAATTATAATCCTAAAAAGAGATCTGTTGTTCCTACCATGTTGTGGAAGCCCCATGAACCTGTATATCCCAGACTGATTAAGACAACAATCGATGGCTTAAGTATTAATGAAACAAAAGAAATGCGGAAGAGGGGACTAGCTCTTCCTGCTTTAACTAAGCTTGCCAAAAATGGTTATTATGCTTTTTTGGTACCGATGGTCAGAGATGCTTTCCTCTCCTGTGAATTGGTTCGGATAGACTGTGAGGGGCTTGAAAGGAAAGATTACAAGAAAATAGGCTGCAAACTCAGGGACATGGTCCCCTGTATTCTGGTGACGTTTGAGAATGAACAGGTTGTGGTTTGGAGGGGGAAGGATTACAAGCCTCCAAAGGATGGATACTTTCTTAAAGATAGAGAATCATTTGACGACGACAATGATGATTTGAATGTGGGAGAAGAGCAACAGGCTATGTAA 1194 0.4883 MSILTRVTRQNPSTATFLARHLSSAASKLHASYTFKPPSSLTPEPQCANSPPTKPNQRKPKPKYRPPSSLDPAGLKRVRSNDLPFDFRFSYTESSPKVRPIGLREPKYSPFGPGRLDRKWTGVCAPAVDPTVESLEGAEDPKLEEQRKKKREMIQGKPLTSDERKALVSQFERSKTNRHVNLGRDGLTHNMLNVIQNHWKFAEAVRIKCMGVPTMDMKNICTQLEDKTFGKVIFRHGGTLILYRGRNYNPKKRSVVPTMLWKPHEPVYPRLIKTTIDGLSINETKEMRKRGLALPALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMVPCILVTFENEQVVVWRGKDYKPPKDGYFLKDRESFDDDNDDLNVGEEQQAM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00593 397 SMART CRS1_YhbY_2 159 244 IPR001890 GO:0003723
Phco1g00593 397 SMART CRS1_YhbY_2 279 362 IPR001890 GO:0003723
Phco1g00593 397 Gene3D - 279 373 IPR035920 -
Phco1g00593 397 FunFam CRS2-associated factor 1, chloroplastic 278 372 - -
Phco1g00593 397 Pfam CRS1 / YhbY (CRM) domain 159 244 IPR001890 GO:0003723
Phco1g00593 397 Pfam CRS1 / YhbY (CRM) domain 282 362 IPR001890 GO:0003723
Phco1g00593 397 MobiDBLite consensus disorder prediction 376 397 - -
Phco1g00593 397 SUPERFAMILY YhbY-like 158 253 IPR035920 -
Phco1g00593 397 Gene3D - 158 255 IPR035920 -
Phco1g00593 397 ProSiteProfiles CRM domain profile. 277 373 IPR001890 GO:0003723
Phco1g00593 397 FunFam CRS2-associated factor 1, chloroplastic 158 255 - -
Phco1g00593 397 MobiDBLite consensus disorder prediction 34 77 - -
Phco1g00593 397 ProSiteProfiles CRM domain profile. 157 255 IPR001890 GO:0003723
Phco1g00593 397 SUPERFAMILY YhbY-like 279 369 IPR035920 -
Phco1g00593 397 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 10 370 IPR044599 GO:0000373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00593 Phco-Chr1 5178503 5181721 Dispersed