Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00584 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAAGAGAAAGCGACGGTGGTGGAGGTTCTGGGTCGCGGTGCGTTTGATTACTTGGTGGCGAATTCGGTTTCTAATGAGAATCTGTTAATGGCGTTTGGGAGCGGCGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGTCCTAACGCGTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCGCAGTCCAAGTTTGGGGATTGGGTTTTGGGTTGGGGAGATGGGTGTTGTAGGGAACCTAGGGAGGGAGAAGAGGGTGGAGAAGTGAGAGGGAAAGGTAGAGGGGTTGTTGCTGATGACGAGAAGGTGCAGGGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCTGACGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACACCGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACTAGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGCTCTCGGATGTGTTGAAATCTAGTTTTGATTACTGTGTGAGGTCTTTTTTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTAGTGCCTACTGATATGGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGAGAGAGTTTTGAGCTTTTGCAGGCTTTGAAGTCTGTGTTTTCTTCACAGGCATCATTGGTCCCTCCCAGGGTCAAGCCAATTGCACCATTGGATTTGGTGAGTGAGAAGAGAGATGAGAATGCAAATGCCCTTTTTTCTAGTGTGCCAATTGGGGATAAGGATAACAATAACAGCAGTAATGGTAATAATAGAGTTGAAGGAATTGGAGTTCCAAAGATTTTTGGCCAGGATTTGAACAGTGTGACTCAATTCAGGGAGAAACTTGCTGTGAGGAAAATGGAGGAGAGGCCCAGGGCGTGGGGAGGTCATCCCAATGGGAATACTATTGGTTTTCCGAATGGTATCCATAGTTCTAGTTGGGGGACCGGTCAAGTTGTGAGGCAGGTTGGTCCTCCTGAAATTCTTGCTCGTACCTTGGCCAACTCTGGTACATTGCCTGTGCCTGTGCCGGAGCTGGCCAATGGCACAAGGCATGATTTTGTGCATAACAATTATCAGCAGCAACGGCCAGTTCAGATGCAAATTGATTTCGCAGGAGCCACTTCAAGGGGAGCCACTTCAAGGGCTTCAGGGAGATCAATCATTGCTGAATCTGAGAATTCTGATGTTGAGGCCTCGTGCAAGGAGGAGAGAGTGAGTGTTGCTGATGACAGGAGGCCGAGGAAGCGGGGAAGAAAGCCAGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGACAAAGGCGGGAGAAGCTGAACCAGCGGTTCTATGCGCTACGTGCTGTTGTTCCAAATATCTCCAAGATGGACAAGGCATCACTATTGGGTGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACCATGGAGTCTGAGAGAGAGAGATTTGGAAGCACCTCTATGGATGGATCAGCAGTGGAAGCCAATGCAAGAGCAGAAAAACATAGTAATGGAGCTCCTGATGTGGATGTTCAAGCTGCACAAGATGGGGTGGTAGTAAAGGTGAGCTGCCCTATTGATGTTCATCCCGTTTCAAAAGTCATCCAAACCTTCAAAGATGCAGAGATTGGTGTTGTTGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTCAGGGACCTGATCAGCTGACCAAGGAAAAGTTGATTGCATTGTTTTCCAAAGCATCCAACCCCATACAGACATTGTGA 1893 0.4791 MKIEVGLGGVWNEEEKATVVEVLGRGAFDYLVANSVSNENLLMAFGSGENLQNKLSDLVERPNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEEGGEVRGKGRGVVADDEKVQGMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVLKSSFDYCVRSFLAKSAGIQTVVLVPTDMGVVEMGSVRMVGESFELLQALKSVFSSQASLVPPRVKPIAPLDLVSEKRDENANALFSSVPIGDKDNNNSSNGNNRVEGIGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGGHPNGNTIGFPNGIHSSSWGTGQVVRQVGPPEILARTLANSGTLPVPVPELANGTRHDFVHNNYQQQRPVQMQIDFAGATSRGATSRASGRSIIAESENSDVEASCKEERVSVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSTSMDGSAVEANARAEKHSNGAPDVDVQAAQDGVVVKVSCPIDVHPVSKVIQTFKDAEIGVVDSKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKASNPIQTL 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00584 630 MobiDBLite consensus disorder prediction 410 428 - -
Phco1g00584 630 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 463 523 IPR036638 GO:0046983
Phco1g00584 630 CDD bHLH_AtAIB_like 457 522 - -
Phco1g00584 630 MobiDBLite consensus disorder prediction 410 471 - -
Phco1g00584 630 Gene3D - 453 525 IPR036638 GO:0046983
Phco1g00584 630 SMART finulus 466 515 IPR011598 GO:0046983
Phco1g00584 630 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Phco1g00584 630 FunFam Transcription factor bHLH13 453 527 - -
Phco1g00584 630 PANTHER MYC 39 618 IPR045084 GO:0003700|GO:0006355
Phco1g00584 630 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 241 IPR025610 -
Phco1g00584 630 Coils Coil 499 526 - -
Phco1g00584 630 MobiDBLite consensus disorder prediction 430 471 - -
Phco1g00584 630 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00584 Phco-Chr1 5077003 5078895 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g00584 bHLH-MYC_N 1.5e-52 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00584 1 5077003 5078895 Phco1g00584 1 5077003 5078895 ECH
Phco11g01221 11 9172370 9174205 Phco1g00584 1 5077003 5078895 PCT