Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00573 ATGAATTTTTGCTATGACATGGAAGGTTGGGTTTTGGATTTAGGTTCATTGCCTCAAACCATTGTCATCGAATGCCGATTCCCGCTGCGGTCGGCATTCGCCTCTAGAATGAATTCTGGTGCTGTCTTGATAATGCCTCCCGTGGGCAATGTGTTCGGGACTAGGGAGCCTCAGGATTTTGAGGACGAGTTTGCGGAGAAAGATCCAACCGGACGGTATATAAGGTACACTGAAATCTTGGGCAGAGGTGCCTTCAAAACTGTTTATAGGGGCTTTGATGAAGTTGATGGAATTGAAGTTGCTTGGAACCAAGTTAAGATTGATGGCCTCTTGCATTCAGTAGATGATCTTGCGAAATTGTATTCTGAAGTTAATCTTTTGAAGTCTTTGAAACATGACAATATCATTAAGTTCTGTGATTCTTGGATTGATGATAAGCAGAAAACTGTTAACATGATTACTGAACTCTTCACATCAGGAAATTTACGGCAATATCGCAAGAAGCATAAATATGTTGAAATGAAAGCTATAAAAGGTTGGGCCAGGCAGATTCTTAATGGCTTACTATATCTTCACAGTCACAGGCCACCCATTATTCATAGAGACTTGAAATGTGACAACATCTTTGTGAATGGAAACCAGGGTGAAGTTAAGATAGGGGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCCCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGTCATACACAGAACTGGTTGACATCTATTCTTTTGGGATGTGCATATTGGAGATGGTTACTTTCGAGTATCCCTATTCCGAATGCAAAAATCCAGCTCAAATCTTTAAGAAAGTTACCTTAGGCATCAAACCCGCTTCCCTTAATAAGGTGAGTGATCCTCAAATTAAGGAGTTTATTGAGAAATGTTTGGTTCCAGCATCTGAGAGATTGTCAGCAGAGGAGCTTCTGAAAGACCCATTTCTACAAGTTGAGAATTCAAAGGATCCCGTCCTTTATCCCTTACAACCACCTAGAAGAACTCTGAGAGCATACTCATTCAAGTCTGGTTCTCAATCTATGGACTTGGATGGTGACTACAAACAGTTTTCTATGAGTATCTATTCTGAAGGCAACCAGGAAAACCCATATTGTCCTGTTTTTGAAGTCCAGAGGGCAAATAATAACAATGAGTTTAGGTTGAAAGGGACTAAAAATGATGATAACTCGGTATCATTGACCTTGCGTATTGCTGATACATGTGGTCGAGTAAGGAATATACATTTTCTCTTTTACCTTGATTCAGATACCGCAGTCTCTGTGGCCACAGAGATGGTTGAACATTTGGAGTTGGCAGATCATGATGTACCTTTCATAGCTGAGCTCATTGATTACTTGCTAATGAAACTTCTCCCTTGGTGGAATCCTTCACATGATCGCGTGCGTGGAGAAATAAATCCTAATATAGATGTCCAAAGCTTCATGGGATGGCCATGGAGTTCTGCCCTAGCGAGTGTTCCCTCTGATTTGGTTATTGAGGAGGATGGCTTATCTCGAATTGATACAGCCACCGAAGAAGATTTTGTGGCCCCCGAGAAGAGCAGCTTTATAGAAAATGGTGATAAGGCTACTTTTGAGGGTGATTGTAATTCACTAAGATCTGAAGCTCCCGAGGTAGTTGCTGAAAATGCTTCTATGAAAGATGAAAATTATAATGATTCCAATGTTGATGCAAGCTCTAAATGCTTAAGTAGTGGCTCCATCTCTGAACTTGAGCTGGGGGATGCATATTTTGAGGACTGTAAATTGCAACCAGAAGATAATTGTGGTGGGGAAGAAGTTGTGATAAATGAATACCCAAAGAACTCGGGGTCAGTTCTTGGAACATCTTCTAATGTTGGGAGCCCAAGAAGTTGCTGTTCTTATGTGTCTTCTTCAACAGTAGAGGAGATTGATCCTGAGCTACAGTTTGAACTTGCTGTGATTGAGTCACACTATCAGCATTGGATCGATGAACTTAACCAAATAAAGTTGGAGGCACTGGAATCCACCAGAAGGAGATGGATGGCCAAGAAGAAACTGGCTGAGCAAAAGTGGCAGGCAAATACATCAATGGCGGAGTTGATGGGATCACGGGCATACTGCTGCTTTAGGTGCCAGAACCTTGTTGCTTTCCATGATGATATTGTTTCCAAAGATTTCCAGGCAACCAATGGTAGAGCCTTTTTATTCTCTCACGCAATGAACATTGTTTTGGGTCCTAAAGAAGATAGGCAGCTTATCACTGGTCTTCACACAGTGGCTGATGTGTATTGCTCTGATTGTGGAGAGGAACTTGGCTGGAAATATGTTAAAGCTTACGAGGAAACACAGAAGTACAAAGAAGGAAAATGTGTGCTAGAGAAGTTCAAGATAGTCAAGGGCAATGGATAG 2439 0.4157 MNFCYDMEGWVLDLGSLPQTIVIECRFPLRSAFASRMNSGAVLIMPPVGNVFGTREPQDFEDEFAEKDPTGRYIRYTEILGRGAFKTVYRGFDEVDGIEVAWNQVKIDGLLHSVDDLAKLYSEVNLLKSLKHDNIIKFCDSWIDDKQKTVNMITELFTSGNLRQYRKKHKYVEMKAIKGWARQILNGLLYLHSHRPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEESYTELVDIYSFGMCILEMVTFEYPYSECKNPAQIFKKVTLGIKPASLNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQVENSKDPVLYPLQPPRRTLRAYSFKSGSQSMDLDGDYKQFSMSIYSEGNQENPYCPVFEVQRANNNNEFRLKGTKNDDNSVSLTLRIADTCGRVRNIHFLFYLDSDTAVSVATEMVEHLELADHDVPFIAELIDYLLMKLLPWWNPSHDRVRGEINPNIDVQSFMGWPWSSALASVPSDLVIEEDGLSRIDTATEEDFVAPEKSSFIENGDKATFEGDCNSLRSEAPEVVAENASMKDENYNDSNVDASSKCLSSGSISELELGDAYFEDCKLQPEDNCGGEEVVINEYPKNSGSVLGTSSNVGSPRSCCSYVSSSTVEEIDPELQFELAVIESHYQHWIDELNQIKLEALESTRRRWMAKKKLAEQKWQANTSMAELMGSRAYCCFRCQNLVAFHDDIVSKDFQATNGRAFLFSHAMNIVLGPKEDRQLITGLHTVADVYCSDCGEELGWKYVKAYEETQKYKEGKCVLEKFKIVKGNG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00573 812 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 716 807 IPR004910 -
Phco1g00573 812 SMART serkin_6 74 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00573 812 CDD STKc_WNK 72 331 - -
Phco1g00573 812 ProSiteProfiles Protein kinase domain profile. 74 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00573 812 Coils Coil 680 700 - -
Phco1g00573 812 ProSiteProfiles Yippee domain profile. 714 811 IPR034751 -
Phco1g00573 812 SUPERFAMILY Protein kinase-like (PK-like) 75 376 IPR011009 -
Phco1g00573 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Phco1g00573 812 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 57 576 - -
Phco1g00573 812 FunFam Probable serine/threonine-protein kinase WNK1 59 155 - -
Phco1g00573 812 FunFam probable serine/threonine-protein kinase WNK9 157 336 - -
Phco1g00573 812 Gene3D - 411 480 - -
Phco1g00573 812 Gene3D Phosphorylase Kinase; domain 1 58 155 - -
Phco1g00573 812 Gene3D Transferase(Phosphotransferase) domain 1 157 337 - -
Phco1g00573 812 Pfam Protein kinase domain 77 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00573 Phco-Chr1 4884285 4890019 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Phco1g00573 Pkinase 9e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00573 1 4884285 4890019 Phco1g00573 1 4884285 4890019 ECH