Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00559 ATGGAATATACTTATTCAGCAGAGGCAGAAACTTACACCAGTAGCAGTACCACCCCATCAAGTGCCATGAGATCAAAGAAGAAAGCCAACAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATCATTGGAAACCATGTTTGAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGACCTTGGATTGCAGCCAAGACAGGTTGCCATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAATTGGAGAGAGACTACGGTATACTACAATCCAATTACAACAGTTTGGCCTCACGTTTTGATGCTCTTAAGAAGGAAAAGCAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTGGAACCAGGTCAGAGTCGCACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAACATGAGGAAAAGCCAAGCCCAACAATGGAAAGATCAGAACATGTACACGGTGTTCTGTCTGATGATGACGCTAGCATAAAGGTGGAAGAGTTTGGCCTAGAAGATGAACATGATCTCTTGAACTTTGTTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTTGAATCCAATGGTCTCTTAGGCCAAACGACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 720 0.4361 MEYTYSAEAETYTSSSTTPSSAMRSKKKANNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFDALKKEKQTLLIQLQKLNHLMQKPLEPGQSRTQVEAANSMDSESENGGTMKCEHEEKPSPTMERSEHVHGVLSDDDASIKVEEFGLEDEHDLLNFVEHADDSLTSPEDWSAFESNGLLGQTTSDYQWWDFWS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00559 239 MobiDBLite consensus disorder prediction 7 27 - -
Phco1g00559 239 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Phco1g00559 239 Pfam Homeobox associated leucine zipper 87 129 IPR003106 GO:0006355|GO:0043565
Phco1g00559 239 MobiDBLite consensus disorder prediction 154 171 - -
Phco1g00559 239 SMART HOX_1 30 91 IPR001356 GO:0003677
Phco1g00559 239 Pfam Homeodomain 34 85 IPR001356 GO:0003677
Phco1g00559 239 Coils Coil 107 127 - -
Phco1g00559 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 167 IPR045224 GO:0003700
Phco1g00559 239 ProSitePatterns 'Homeobox' domain signature. 62 85 IPR017970 GO:0000981|GO:0006355
Phco1g00559 239 MobiDBLite consensus disorder prediction 1 38 - -
Phco1g00559 239 MobiDBLite consensus disorder prediction 132 153 - -
Phco1g00559 239 PRINTS Lambda-repressor HTH signature 67 83 IPR000047 GO:0003677
Phco1g00559 239 PRINTS Lambda-repressor HTH signature 58 67 IPR000047 GO:0003677
Phco1g00559 239 MobiDBLite consensus disorder prediction 131 171 - -
Phco1g00559 239 CDD homeodomain 34 88 IPR001356 GO:0003677
Phco1g00559 239 FunFam Homeobox-leucine zipper protein ATHB-7 14 87 - -
Phco1g00559 239 SUPERFAMILY Homeodomain-like 12 89 IPR009057 -
Phco1g00559 239 Gene3D - 15 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00559 Phco-Chr1 4708731 4709684 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco1g00559 Homeodomain 2.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00559 1 4708731 4709684 Phco1g00559 1 4708731 4709684 ECH
Phco11g01200 11 8988390 8989381 Phco1g00559 1 4708731 4709684 PCT