Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00554 | ATGGGTCAGTGCTACGGCAAGTCCAATCTCACGCCGGAAAATGACGCCGCCGCCGCAGAGGAAACCACCGTCGACACAGTTGTCGCGGTGGCCGGATCCGCTGACGCCCCGCTCTCTCCACTGCCGGTGAAGGGCACGCCGGCGCGGGCGAGTCCATGGCCGAGTCCCTACCCACACGGTGGCGGCGTGACGCCGTCCCCGGCGAGAGGCACGCCGAGGAGATTTTTTCGGCGGTCGTTCGCGCCTCCGTCGCCGGCGAAGCACATAAGGGCGTCGCTAGCGAAGCGGCTTGGGCACGCGAAGACGCCTAAAGAGGGGCCGATCCCGGAGGAAGAAGCGGCGGCGGCGGTGGCGACTGAACAGTCGCTGGATAAGAGCTTCGGGTACGGTAAGAATTTTGGGGCGAAATATGAAATTGGGAAAGAAGTGGGTCGAGGGCATTTTGGTCATACTTGTTATGCTAAGGGGAAGAAGGGCGAACTCAAAGACCAACCTGTGGCTGTTAAGATCATTTCCAAGGCGAAGATGACAACTGCAATAGCAATTGAAGATGTTCGCAGAGAGGTGAAGATATTAAAAGCTCTATCTGGCCATGAACATCTTGTCAAATATCATGATGCTTTTGAAGATGCCAACAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTGTCAAGGGGAGGAAAGTATTCAGAGGAGGATGCCAAGGTTATTGTTTTGCAGATCCTAAGTGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACCTTAAACCTGAGAATTTCCTTTTCACTTCAAGAAGTGAAGATGCTGACATGAAGCTTATTGATTTCGGTCTATCTGACTTCATCCGGCCAGATGGACGGCTGAATGACATTGTTGGGAGTGCGTATTATGTTGCACCCGAGGTCCTTCACAGGTCATATAGTCTTGAAGCAGATATATGGAGTATCGGTGTTATTACCTATATCTTATTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTTAGAGCTGATCCTAATTTCGATGATTTACCTTGGCCTTCTGCCTCTGCAGAGGCTAAGGACTTTGTAAAACGGCTTCTAAACAAGGACTACAGGAAAAGAATGACAGCTGTCCAAGCTCTAAGTCATCCTTGGTTGAGGGATGACAGCCGTCCAATCCCTTTAGACATATTAGTTTATAAACTAGTGAAGGCTTATCTTCTTGCAACACCTCTCAAACGTGCAGCAGTGAAGGCACTTTCAAAAGCCTTGCCAGAGGATGAATTGCCCTACCTTAGGGCACAATTCAGATTGTTGGGACCCAATAGAGACGGACTCATCTCCCTTGACAATTTCAAAATGGCTCTTGTACACAATGCAACTGATGCAATGAGGGAGTCAAGGGTTGTTGACATCATAAATGCAATGGAGCCACTTGCCTATAGAAAGATGGACTTCGAAGAATTTTGTGCTGCTGCAATTAGCACATACCAATTGGAAGCACTTGATAGGTGGGAAGATATTGCCTCAACTGCATTTGAACATTTTGAGACAGAAGGGAACCGTCTGATATCGGTTGAAGAATTGGGCAGAGAGTTGAATCTTGGGCCTTCAGCTTATTCAATTCTCAAAGACTGGATAAGAAATAGTGATGGAAAGCTTAGCTTACTTGGATATACAAAATTTTTGCATGGTGTGACTCTCCGTAGTTCAAACCCAAGACACAGGTAG | 1770 | 0.4791 | MGQCYGKSNLTPENDAAAAEETTVDTVVAVAGSADAPLSPLPVKGTPARASPWPSPYPHGGGVTPSPARGTPRRFFRRSFAPPSPAKHIRASLAKRLGHAKTPKEGPIPEEEAAAAVATEQSLDKSFGYGKNFGAKYEIGKEVGRGHFGHTCYAKGKKGELKDQPVAVKIISKAKMTTAIAIEDVRREVKILKALSGHEHLVKYHDAFEDANNVYIVMELCEGGELLDRILSRGGKYSEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDGRLNDIVGSAYYVAPEVLHRSYSLEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPSASAEAKDFVKRLLNKDYRKRMTAVQALSHPWLRDDSRPIPLDILVYKLVKAYLLATPLKRAAVKALSKALPEDELPYLRAQFRLLGPNRDGLISLDNFKMALVHNATDAMRESRVVDIINAMEPLAYRKMDFEEFCAAAISTYQLEALDRWEDIASTAFEHFETEGNRLISVEELGRELNLGPSAYSILKDWIRNSDGKLSLLGYTKFLHGVTLRSSNPRHR | 589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00554 | 589 | Gene3D | Phosphorylase Kinase; domain 1 | 131 | 226 | - | - | |
| Phco1g00554 | 589 | CDD | STKc_CAMK | 136 | 398 | - | - | |
| Phco1g00554 | 589 | FunFam | Calcium-dependent protein kinase SK5 | 309 | 408 | - | - | |
| Phco1g00554 | 589 | SMART | serkin_6 | 137 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco1g00554 | 589 | SUPERFAMILY | Protein kinase-like (PK-like) | 129 | 415 | IPR011009 | - | |
| Phco1g00554 | 589 | FunFam | CDPK-related kinase 3 | 129 | 301 | - | - | |
| Phco1g00554 | 589 | SUPERFAMILY | EF-hand | 426 | 578 | IPR011992 | - | |
| Phco1g00554 | 589 | FunFam | CDPK-related kinase 1 | 130 | 225 | - | - | |
| Phco1g00554 | 589 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
| Phco1g00554 | 589 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 261 | 273 | IPR008271 | GO:0004672|GO:0006468 | |
| Phco1g00554 | 589 | ProSitePatterns | Protein kinases ATP-binding region signature. | 143 | 169 | IPR017441 | GO:0005524 | |
| Phco1g00554 | 589 | Gene3D | - | 409 | 579 | - | - | |
| Phco1g00554 | 589 | FunFam | CDPK-related kinase 1 | 435 | 507 | - | - | |
| Phco1g00554 | 589 | ProSiteProfiles | Protein kinase domain profile. | 137 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco1g00554 | 589 | MobiDBLite | consensus disorder prediction | 34 | 87 | - | - | |
| Phco1g00554 | 589 | Gene3D | Transferase(Phosphotransferase) domain 1 | 227 | 408 | - | - | |
| Phco1g00554 | 589 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 440 | 475 | IPR002048 | GO:0005509 | |
| Phco1g00554 | 589 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 121 | 564 | - | - | |
| Phco1g00554 | 589 | Pfam | Protein kinase domain | 137 | 399 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00554 | Phco-Chr1 | 4643207 | 4650374 | Dispersed/Wgd |
Transcription factors information