Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00552 ATGGAGGAACTAATCATCTCTCCTTCCTCATCCTCCTCTTTGGTCTCTCAACCACAAGAAAACCCAATCCCAACACCATCCCTTCAACAAAAACTCCAATTTCTCCTCCAAAGCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGCAACCTTTACCTGTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCCCCAAAATTCCCAACCCCCATTTCCACCAAGAAATTCACCAAAACCCCCACAACGGAAAACATCAACGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCACGTTTACCGTCACCAATTCTTCTTCAACCTCTCCCACTCCTTCTTCACTCCTTGGCAAGTCTTTTGCTTTGGGATCCGTACTGTGGCTGAACAACAAGCACGAGCTCCAATTCTACAAGTGCGAAAGATCCAACGAGGCCCACTTGCACGGGATCCAAACGTTGATCTCCATCCCCACACAAGATGGTGTCGTCGAAATGGGATCCTACGATAGCATCAAACAAAACTGGAACCTCGTCCAACACGTGAAGTCCCTCTTCCAACCCCTCCCAGATCCGCTTCCCGTTCAAGTCCTCAACGACAATACCATCTCCTTCGCTGACATCGGCATCGTCGCCGGAATCCAAGAAACCAAAAAGCGAAAACAAGCCCAAACACCACCCAATAACAAAAAAGACAGCTACGTAGACTCCGAACACTCTGATTCGGATTGCCCAATGTTGCCAACCACTACAACCCCGACAGCCTCGGAGCCCAAAAAACGAGGTAGAAAACCTGTTATCGGCCGCGAGACACCAATGAACCACGTGGAGGCTGAGCGACAACGGAGGGAGAAGCTGAACCACCGCTTCTACGCGCTACGCGCGGTGGTTCCGAATGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGATGCTGTCACTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAACGAGAGGGTAATAAAAGGGTCAAGACAGAAATGATGGATACCATGGATAATCAGAGCACCACCACCACCTCCACCATCGTAGACCAAAGTAGGCCTGGTTCTGGAGGCCCAGGCCCATTTGGGCTCGAGATCGATGTGAAGATCATGGGGCCCGATGCCATGGTGAGGGTGCAATCCGAAAATGCGAACCACCCCGGGGCGAGGCTAATGGGTGCATTGAGAGACCTAGAGTTTCAGGTTCATCACGCTAGCATGTCGTGCGTTAACGATCTTATGCTTCAGGACGTGGTGATTAATGTCCCTAATGGAATGAGGAGCGAAGAGGGTCTTAAATCTGCCATTCTCATGAGGTTGGATCAGTGA 1386 0.5058 MEELIISPSSSSSLVSQPQENPIPTPSLQQKLQFLLQSQPDWWVYAIFWQASHDDNGNLYLSFGEGHFQGTKETSPKFPTPISTKKFTKTPTTENINDAEWFYVMSLTRTFTVTNSSSTSPTPSSLLGKSFALGSVLWLNNKHELQFYKCERSNEAHLHGIQTLISIPTQDGVVEMGSYDSIKQNWNLVQHVKSLFQPLPDPLPVQVLNDNTISFADIGIVAGIQETKKRKQAQTPPNNKKDSYVDSEHSDSDCPMLPTTTTPTASEPKKRGRKPVIGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVTYINELKAKIEYLESQQQREGNKRVKTEMMDTMDNQSTTTTSTIVDQSRPGSGGPGPFGLEIDVKIMGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPNGMRSEEGLKSAILMRLDQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00552 461 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 196 IPR025610 -
Phco1g00552 461 MobiDBLite consensus disorder prediction 267 291 - -
Phco1g00552 461 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 342 IPR036638 GO:0046983
Phco1g00552 461 Coils Coil 326 346 - -
Phco1g00552 461 MobiDBLite consensus disorder prediction 357 372 - -
Phco1g00552 461 Pfam Helix-loop-helix DNA-binding domain 284 329 IPR011598 GO:0046983
Phco1g00552 461 MobiDBLite consensus disorder prediction 227 291 - -
Phco1g00552 461 MobiDBLite consensus disorder prediction 357 379 - -
Phco1g00552 461 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Phco1g00552 461 MobiDBLite consensus disorder prediction 1 24 - -
Phco1g00552 461 Gene3D - 278 345 IPR036638 GO:0046983
Phco1g00552 461 PANTHER MYC 13 458 IPR045084 GO:0003700|GO:0006355
Phco1g00552 461 SMART finulus 286 335 IPR011598 GO:0046983
Phco1g00552 461 CDD bHLH_AtAIB_like 278 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00552 Phco-Chr1 4608663 4610048 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco1g00552 bHLH-MYC_N 5.2e-46 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00552 1 4608663 4610048 Phco1g00552 1 4608663 4610048 ECH