LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco1g00537	ATGCCGGAAAACATGAGCATATCTGTCAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTCCATCCAACTGAAGAGGAGCTTCTTCAGTACTACTTGAGGAAAAAGGTCTCTTACGAGAAGATTGACCTCGATGTCATTCGTGATGTTGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACTCGCACCAATCGCGCCACTGCTGCGGGATTCTGGAAGGCCACTGGCCGTGACAAAGTCATATACAGCAACGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCTGACTGGATCATGCATGAATACAGACTAGACGACAACACCACCAGCGACACCAATATTGTGTCGAATGTGATGGGGGATGGTGGTCAGGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACAACCTGAAAACCCTAGACAGCCCCTTAGGTTCGGGAGAAGGTAGAAGGAGCCACTTGTTCGAGTCGTGCGACGAGGGCGCTTTGGAGCAAATACTTCAGCAAATGGGGAGGGGTTGCAAGGAAGAGAGCAGCTACGAGGGAAACTACAGCTATGGAAGGTTGGGAAGGGGTTACGAGACAGGTGTGAACAATGACAGGTTCATGAAGCTGCCAAGCCTAGAGAGCCCAAAATCCAGAAGCATGGAGAGTCAGCAGAACAACAACAACAACAGTAATAATGGTGATAACAACAACGAGCAGAATAATAATGGGTACCATCCCATTATTCCAGTAGACATGGGGACGGATAATGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCATGCAATGGAGGCATCATCAGGTGGTGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTGGTTGCCTCTCAGCTCAATGGCCAAACCGAGGCCTCTAGGCACTTCGCATGCTTCAACGACCCCACCATCGCCTACTGCACTACCCACCATGATCTACCATTGCCCACCCTCAGATCCTCATCAAATCCTTCATCAACCTCCACCCTCACCAGACCTTCCGCTGCATCCGCATACATCAACCCCGCACACGACTTCACCAGCGAGATTGACCTCTGGAACTTCACTCGCTCCACCTCCGAACCTCTCTGCCACGTCTCCAACACCTCACTCTAG	1269	0.5051	MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNNLKTLDSPLGSGEGRRSHLFESCDEGALEQILQQMGRGCKEESSYEGNYSYGRLGRGYETGVNNDRFMKLPSLESPKSRSMESQQNNNNNSNNGDNNNEQNNNGYHPIIPVDMGTDNEGSFATHQVSGGDPNMVHAMEASSGGGGLTNWAALDRLVASQLNGQTEASRHFACFNDPTIAYCTTHHDLPLPTLRSSSNPSSTSTLTRPSAASAYINPAHDFTSEIDLWNFTRSTSEPLCHVSNTSL	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco1g00537	422	MobiDBLite	consensus disorder prediction	253	282	-	-
	Phco1g00537	422	Gene3D	NAC domain	24	180	IPR036093	GO:0003677\|GO:0006355
	Phco1g00537	422	SUPERFAMILY	NAC domain	9	175	IPR036093	GO:0003677\|GO:0006355
	Phco1g00537	422	ProSiteProfiles	NAC domain profile.	15	175	IPR003441	GO:0003677\|GO:0006355
	Phco1g00537	422	Pfam	No apical meristem (NAM) protein	16	143	IPR003441	GO:0003677\|GO:0006355
	Phco1g00537	422	FunFam	NAC domain-containing protein	24	179	-	-
	Phco1g00537	422	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	13	270	-	-
	Phco1g00537	422	MobiDBLite	consensus disorder prediction	245	291	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco1g00537	Phco-Chr1	4360551	4362377	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Phco1g00537		NAM	3.9e-36	No_clan