Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00525 ATGGCTGAGTTGAGTGGTACGATGCAAGAGATAGGGACGGACAACAATAATCGCTCTGCAGAGGTGGTTCTGTGGGAGAGGTTTTTACCGCGGATGGTGCTTAGAGTCCTGCTTGTGGAAGCTGATCATTCCACTCGACAAATCATCGCCGCGCTTCTTCGCAAATGCAGTTACACAGTTATCGCTGTTCCAGACGGATTAAAGGCATGGGAATTGTTGAAGAAGAAGGCGTCTGAGCTAGATCTTATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTGCACTTCTTTCTTTAATCATGGAGCATGAAATTTGTAAAAGCATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCAGTTGATTTTCTTATAAAACCTATTCGGAGGAATGAACTCGTGAACTTGTGGCAACATGTATGGAGAAGGCACGCTAGTAGCACTCCTACTCAAAATACAACTTTTTCACCAAAATATCTTAAAACTGCCTCCGAGGACAATTCTGCAAGCAATAAATCCAGTGGTTCTGTGGCTTCCTCTAAGAAAAACAACGAATGCAGTGAGAGATTAAGTGAGACTCAAGACGTGCCCCAGGTGAAAAATTCTAAACAGAAGAAAATTGATTTGGTGAAGCATGAAAAGTTTGCCAGATTTGAAAGTGAATCAGCAAAGATTAATAATGAAACAAGAGATAAATCAATTACAATTGTATCAGACACTGCAAGGAGCGACAAAACTTTTGAATCGACAGATCTAAGGCTAGAACAAGACCATTGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATATGATTTAGGCATAGGAGATTCTAATATTAGTACTGAGTTGCATGGATGGAGTGATGAACGGGTGAAACCAATTAAAGGAGCTATTGACTTGATTGCAACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAATCTCAATGGTGGTAATACAACCATGTTTGATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGCTCATGTAAACAAGCAAGCGAAGCAACTGCGGAATCTCAAAGATTGAACCATTCACACAACTCTGCATTTTCTTGGTATAGTAATGGTAAATTGGTGCACCCTCTTTTTCAAACACCATCAATTACATCAACTGAAGTAAACAACCCCAGTTGGGATTCTCATGAATCCCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGGTGGCTCAAATAAAAACCTGGAGAATATGATCAGTACAGTTATTGATCAGTATGGACAAGTTAAGCCAAATTTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTATTTCCGATCTTAAGTCCAAGGGACACGGTAATGTTTTCACTTCTGTGTTCTACGCACCATCTGGTACTCATCCTGAGCGGAGTTCGAAACCAGTCTGCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCGGAAAGTCACAACTCTGACCAATATCATGACTGTTCCAATGTTGCTACTTGTCTTAATCAAAATGTAAAGGAAGACACTGATTTGGATCAGGCAAGGCATGATTCTCCTGCTGCTGATCAGAGTACTGGTAACAGTTTATGCCATGATACTTCATATCATGTCAATAGTAGTGCTTATGGAAGCATGGATAGTGGAAATGATGGGCATGCTACTTCAGTTATAGTATCCAAGAACAACACAGAAGGTTTCAGTGATAGTGTTGGTCATAATTATGATGGGTCTCGAGCCACATATTCTCATCGCACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGAATGAAGCGGAAAGAGAGATGCTTCGAGAAAAAGGTTCGATATCAAAGCCGGAAGAGACTGGCAGAACAGCGGCCTCGGATCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCATCCAGTTGCTGATGCTGGTGGTGATTCATAA 2028 0.4088 MAELSGTMQEIGTDNNNRSAEVVLWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVIAVPDGLKAWELLKKKASELDLIITEVDLPAISGFALLSLIMEHEICKSIPVIMMSSHDSVSMVLKCMLKGAVDFLIKPIRRNELVNLWQHVWRRHASSTPTQNTTFSPKYLKTASEDNSASNKSSGSVASSKKNNECSERLSETQDVPQVKNSKQKKIDLVKHEKFARFESESAKINNETRDKSITIVSDTARSDKTFESTDLRLEQDHCCADTEIEVEILKYDLGIGDSNISTELHGWSDERVKPIKGAIDLIATFGNLPKHPDENCNLNGGNTTMFDGVTQLELSLRSDFPGSSCKQASEATAESQRLNHSHNSAFSWYSNGKLVHPLFQTPSITSTEVNNPSWDSHESHKLSRTTSGNCCQYGGSNKNLENMISTVIDQYGQVKPNLSNSQCGMLPVSGVISDLKSKGHGNVFTSVFYAPSGTHPERSSKPVCQNESSPFPTSTSSQSNPESHNSDQYHDCSNVATCLNQNVKEDTDLDQARHDSPAADQSTGNSLCHDTSYHVNSSAYGSMDSGNDGHATSVIVSKNNTEGFSDSVGHNYDGSRATYSHRTSQREAALTKFRMKRKERCFEKKVRYQSRKRLAEQRPRIKGQFVRQVHNDHPVADAGGDS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00525 675 MobiDBLite consensus disorder prediction 174 215 - -
Phco1g00525 675 MobiDBLite consensus disorder prediction 174 210 - -
Phco1g00525 675 SMART REC_2 34 149 IPR001789 GO:0000160
Phco1g00525 675 ProSiteProfiles CCT domain profile. 619 661 IPR010402 GO:0005515
Phco1g00525 675 MobiDBLite consensus disorder prediction 485 522 - -
Phco1g00525 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 318 IPR045279 GO:0009736
Phco1g00525 675 Pfam Response regulator receiver domain 36 147 IPR001789 GO:0000160
Phco1g00525 675 MobiDBLite consensus disorder prediction 542 563 - -
Phco1g00525 675 Gene3D - 32 279 - -
Phco1g00525 675 CDD psREC_PRR 36 139 - -
Phco1g00525 675 Pfam CCT motif 619 661 IPR010402 GO:0005515
Phco1g00525 675 MobiDBLite consensus disorder prediction 549 563 - -
Phco1g00525 675 SUPERFAMILY CheY-like 34 161 IPR011006 -
Phco1g00525 675 ProSiteProfiles Response regulatory domain profile. 35 153 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00525 Phco-Chr1 4246535 4251114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Phco1g00525 Response_reg 8.5e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00525 1 4246535 4251114 Phco1g00525 1 4246535 4251114 ECH
Phco7g03040 7 48978683 48982718 Phco1g00525 1 4246535 4251114 PCT