Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00518 ATGGACGCGTACTCCTCTGGAGAAGAAGTCGTTGTAAAGACGAGAAAACCGTATACGATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAACTGCACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCACAGAAGTTTTTTACAAAGTTGGAGAAAGAGGCCCTTGTAAAGGGTGTTCCAATTGGACAAGCTCTTGATATAGATATTCCCCCTCCACGGCCAAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGACCAGGATTGATACCGCAACATTGCATAGTGGAGCAAAGGATGGAAAGCTCAATTTAGTTGAATCTTCACATGACAACCAAGCACTGGACTTGGAAAAAGAACCACTTCCGGAGAAATATGATTTAGACGAGGGGCTAACAACAGTAAAGGAAAATAAGGATGAGAACTGCTCAAAAGTATGTACAGTTATCCAGGAGGTACCCTGTTCCTCTATATCTTCAGCAAACAGGAGTTCAATATCTATGTCAGTGCCACTGGGAACTTCATGCGTATTAAAGGAGATTACAAGTTCAGTGAAAGAGGTAATAACTCGAGATGAAAATTCTGAATCATTTCTGACTGTTGAACTTGGAAACAGGAATTTGGAGATCAATGATGGAAAACAGGCTAATGGCACTAGTAAAAACTCCACGTTAGAGAATTCTGATGCTTTACAAACGAAATTGGTTCAAAATGAGAAAACAGATGGTCTCGATAGTGCATTAACAATTGATGGGATGCAAGGCAATCAGAATTACCCTAGACATGTAACTGTGCACGTCGTTGACGGGAAACTTGGAACAAGTACTCAAAATCCATCACAAGATATGCTGTTTCGAGACTCTATGTTTCAGCCAATAGGAGGGGCTAATGGGCAACCAAATCTTTTCACCAATTCAGCTCCAACGAACACAAGTGAAAGTCAAAATAATACAGCACGATCTTCTGTTCATCAATCATTTCTTCCGTATCCTCCCTTCACACAGCACAACCAGGACGATTACCAATCATTTCTTCACATGTCTTCCACGTTTTCTAATCTTGTTGTCTCTACCTTGCTGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTCGCAGCTACATTTTGGCCCTACGCAAATCCAGAAACTTCAGCAGATTCTCCTAGGTGCTCCCAAGGAGGTTTCACATCTAGACAAGTCGGTTCCCCTCCAAGCGTTGCAGCTATTGCAGCTGCTACTGTAGCTGCTGCAACTGCGTGGTGGGCAGCTCATGGATTGCTTCCTTTGTGTGCTCCTCTTCATACTGCTTTTGCTTGTCCTCCTGCATCTGTGACTGCAGTACCATCAATGCATCCTCCTGTGCAAGATCAGAAGAAGCATCCAGAATACTCGGAAGCACCGCAAGCTCAACATTCAGCTTCGAAGTCACTAGCTGTCATTTCATCAGATTCTGAGACTGGAGATGCCAAGTTAAATACTTCACCAAAGGCTACTGATCATGTGACGAACGAAACAATTTCTGAGCACCTTGATTCCGACAAAACAAAGGGCAGAAAACAGGTTGACCGTTCCTCGTGTGGTTCCAACACAGCCTCAAGCAGCGATGTGGAAACTGATGCACTAGGGAAGGATGAGAAAGGGAAGGAAGAGCCTGAAACACCCGATGCTAACAATTTAGCCATTGAGTTTAGTAATCGTCGTAGAAGCATTTGCAACCTTACTGATTCTTGGAAAGAAGTCTCTTCAGAGGGGAGACTAGCATTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCTCAAAGCTTTTCACCTCCTCATGCTTTAAAGAATAAGGACCAAATGGACATCACCAATGATAACAAGCAAAACATAGCTGATAGAAATGAAGACCTTGACAGCAAGAAATGCAGTTCTAATGCACTGCATACAATTCCGCCATTTGTAGAAAATAACGTGGGACTGTTAACCATTGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGTTCCGTGGAGGCCAGGGAAAATAGGGTTGGAGCGAGCAATCAAGGTGAAGAGAAAGGTTGTAAGAGAATACGTTTGGAAGGGGATACTTCGACTTGA 2187 0.439 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTRIDTATLHSGAKDGKLNLVESSHDNQALDLEKEPLPEKYDLDEGLTTVKENKDENCSKVCTVIQEVPCSSISSANRSSISMSVPLGTSCVLKEITSSVKEVITRDENSESFLTVELGNRNLEINDGKQANGTSKNSTLENSDALQTKLVQNEKTDGLDSALTIDGMQGNQNYPRHVTVHVVDGKLGTSTQNPSQDMLFRDSMFQPIGGANGQPNLFTNSAPTNTSESQNNTARSSVHQSFLPYPPFTQHNQDDYQSFLHMSSTFSNLVVSTLLQNPAAHAAASFAATFWPYANPETSADSPRCSQGGFTSRQVGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASVTAVPSMHPPVQDQKKHPEYSEAPQAQHSASKSLAVISSDSETGDAKLNTSPKATDHVTNETISEHLDSDKTKGRKQVDRSSCGSNTASSSDVETDALGKDEKGKEEPETPDANNLAIEFSNRRRSICNLTDSWKEVSSEGRLAFQALFSREVLPQSFSPPHALKNKDQMDITNDNKQNIADRNEDLDSKKCSSNALHTIPPFVENNVGLLTIGLGQGKLKTRRTGFKPYKRCSVEARENRVGASNQGEEKGCKRIRLEGDTST 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00518 728 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Phco1g00518 728 MobiDBLite consensus disorder prediction 523 542 - -
Phco1g00518 728 SMART sant 23 71 IPR001005 -
Phco1g00518 728 MobiDBLite consensus disorder prediction 316 352 - -
Phco1g00518 728 MobiDBLite consensus disorder prediction 470 581 - -
Phco1g00518 728 MobiDBLite consensus disorder prediction 488 522 - -
Phco1g00518 728 MobiDBLite consensus disorder prediction 86 122 - -
Phco1g00518 728 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Phco1g00518 728 PANTHER SWI/SNF COMPLEX-RELATED 7 617 - -
Phco1g00518 728 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Phco1g00518 728 MobiDBLite consensus disorder prediction 559 576 - -
Phco1g00518 728 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Phco1g00518 728 Gene3D - 26 73 - -
Phco1g00518 728 MobiDBLite consensus disorder prediction 704 728 - -
Phco1g00518 728 CDD SANT 26 69 IPR001005 -
Phco1g00518 728 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Phco1g00518 728 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Phco1g00518 728 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Phco1g00518 728 MobiDBLite consensus disorder prediction 543 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00518 Phco-Chr1 4145246 4160148 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco1g00518 Myb_DNA-binding 1.9e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00518 1 4145246 4160148 Phco1g00518 1 4145246 4160148 ECH
Phco7g03047 7 49037799 49053388 Phco1g00518 1 4145246 4160148 PCT