Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00517 ATGATAACGATGGAAGCTAGAGTGATAGGGGATTACATAATGGGTCCTTCAATCGGGTCGGGTTCGTTTGCCGTGGTATACCGTTCAAGGCACCGAGTTTCCGGTTTGGAAGTTGCAATTAAGGAGATTGATCACAGGCAACTTAGTCCCAAAGTCAAGGAACACCTTCTCAAAGAGATTTCTATCCTTAGCACCATCAGGCATCCCAACATCGTTAGACTCTTCGAGACAATTCAGACCAATGACAGGATTTACCTTGTTTTGGAGTATTGTGCTGGCGGGGACCTTGCTGCTTACATTCATCGCCATGGCAAGGTTTCTGAAACGGTTGCACGCCATTTCATGAGGCAATTGGCTGCCGGGTTACAGGTGCTTCAAGAAAAGAACCTCATTCACAGAGATTTAAAACCACCGAATTTACTATTGGCAACTACTGCAGCCACACCAATTATGAAAATAGGAGATTTTGGTTTTGCAAGGTCTCTTGCACCCCAGGGGCTGGCTGATACACTATGTGGTTCACCTTATTACATGGCTCCAGAGATAATTGAAAATCAAAAGTACGATGCCAAGGCTGATTTATGGAGTGTTGGAGCAATATTGTATCAACTAGTGATTGGGAGGCCACCATTTGACGGAAATAATCAATATCAGCTTTTTCAAAATATTTTGGCATCCACTGAACTGAACTTTCCGCCAGAGGCATTAAAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAACCTTTTACGTCAAAATCCAGATGAGAGATTAACATTCAAGGCATTCTTCACCCACAATTTCCTTCAGAATTCCGGGTCTACCGTAGGAAAATTGACGGCTCATCAATCAGGTGGCTCTCTGTCTGAGATGTCTCCAACTACTGCAAGTGGTAAGATGGGGAAGGCTGTTGATGCTGATTCACGTTTAATGCAGTCTGTCGAGAAAGACTATGTCCTTGTCAATTCCCATTTTGCATCATTGGAGGCTTTTTCCGACTACTTTGATGCATCTGTGCAAGATGATTCCTTATACAATATTTCTCTAACTCATTCAAAGATTACTGATCTGGATATTGGAGTTGCAAAAAAAACAGAGGATCTGACCTCTTCCTCCAGTAGAGGATTAGAGAATTTAAAAAGCAATAAACTTGAGACATGTGTGGCATCATTTGAATTTACTGCTTTAAGGAAAGAGCATGAAATTTCCTCACTGCACCCTTCAAACAGGTTAGAGTTGTTGCATCAGTATGTGAAGATCCTTAAAGAACTCTCACATCAAAAGTATGGTACAGGAATGTATCTAGAGTCACTTGCAGTTGAGTTGGTGGTTTTGGCGATAGGGAAGAAGGCTTTAGAAATTAGTAACTCTTGGCTAGCCTCTCTTACTGGGAATGAGTTGCCTGGGAGCAGTTCATCTAATGAATCCATACCTTCAATTAATATGGAGTTATCACAGACTTCAGAACCGAAAATAGATTTTAGTGATCCTCCATCTGTGTCCATGTGGGCCAAACATGAGTTTATTGTTGCTGTTGATCGTGCTGAAAAACTATCATCTCGCATTCAAAATATGGATGGGGCTGCTGAGATGCCAGATGCAATGGAAATTATATTCCAAAGCGCTCTTTCAATCGGGACCAATGGTGCTGTAGATGAATATATGGAGAACAGAGATAGGGCTAATGCATCTTACTCAAGAGCGATGCTGCTACTTTCATTTTTGGTGAGAGAAGCAGAGAACCTTCCACTGAACCCACCATTTTCACTCATTGCCACTAATAAAGAGAGAATCTTGCAATACATTCACTTATTGCAGTCTCGTAAGAAATCTTCATTGGAGTTCTCTTCAAATAAGCCACATTCACTTACATCAAAGTAA 1884 0.4145 MITMEARVIGDYIMGPSIGSGSFAVVYRSRHRVSGLEVAIKEIDHRQLSPKVKEHLLKEISILSTIRHPNIVRLFETIQTNDRIYLVLEYCAGGDLAAYIHRHGKVSETVARHFMRQLAAGLQVLQEKNLIHRDLKPPNLLLATTAATPIMKIGDFGFARSLAPQGLADTLCGSPYYMAPEIIENQKYDAKADLWSVGAILYQLVIGRPPFDGNNQYQLFQNILASTELNFPPEALKELHSDCLDLCRNLLRQNPDERLTFKAFFTHNFLQNSGSTVGKLTAHQSGGSLSEMSPTTASGKMGKAVDADSRLMQSVEKDYVLVNSHFASLEAFSDYFDASVQDDSLYNISLTHSKITDLDIGVAKKTEDLTSSSSRGLENLKSNKLETCVASFEFTALRKEHEISSLHPSNRLELLHQYVKILKELSHQKYGTGMYLESLAVELVVLAIGKKALEISNSWLASLTGNELPGSSSSNESIPSINMELSQTSEPKIDFSDPPSVSMWAKHEFIVAVDRAEKLSSRIQNMDGAAEMPDAMEIIFQSALSIGTNGAVDEYMENRDRANASYSRAMLLLSFLVREAENLPLNPPFSLIATNKERILQYIHLLQSRKKSSLEFSSNKPHSLTSK 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00517 627 Gene3D Transferase(Phosphotransferase) domain 1 3 336 - -
Phco1g00517 627 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Phco1g00517 627 SMART serkin_6 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00517 627 FunFam Aurora kinase A 4 94 - -
Phco1g00517 627 CDD STKc_ATG1_ULK_like 18 269 - -
Phco1g00517 627 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 6 492 IPR045269 GO:0004674|GO:0006914
Phco1g00517 627 ProSiteProfiles Protein kinase domain profile. 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00517 627 MobiDBLite consensus disorder prediction 281 297 - -
Phco1g00517 627 Pfam Protein kinase domain 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00517 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Phco1g00517 627 FunFam Maternal embryonic leucine zipper kinase 5 285 - -
Phco1g00517 627 SUPERFAMILY Protein kinase-like (PK-like) 8 271 IPR011009 -
Phco1g00517 627 MobiDBLite consensus disorder prediction 281 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00517 Phco-Chr1 4139158 4143871 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Phco1g00517 Pkinase 6e-73 CL0016