Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00515 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAAGAGGAGGAGGAGGAGGAGGAAGCAGCAGAAGAAATCATCACAAGAGAAGATAGCAGCAGTAAGCACCACTACCCCTTTTCTTCTACCTCTTTGTCTTTATCTTCTGCTCCTTCAATATCAAATTATACTTCTACTACTGCTGCTGCACGTCCTCATCATCATCATCATCATCATCATGTTATAAATATTCCTCACCAACAAAATCCATGGCTGGGGATGAATATTCATGATCATGATCATCACCTTCAGTCTCCAGAGACCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTGTTACACCAACACCAGGATGCCGCAGGTTCCAATTTCATCATCAGCAATCATCATCATCATCATCACCACACAACAAAGCAGCTAGACTTCATGGACTTGACACTGGGGAGCAGCAAGGATGAGGGGAATTTGCAAGGATCGGGAGGTGGTGCTTCTTCGGTGTTTCCTCATCATGCAAGTGGTAGTTCTTCTGCCGATGGTAACGTGAACAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACACCAAGTGATGTGGGGAAGCTGAACCGATTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGCTGCTCAATTTTGAGGACAGGAATGGTAAGTTATGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTAGGGGAGTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCATCAAGGCCCTGACCCTTCAAGCGCACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTTATCAGATGGGGTGCCACTGGCAGATTGTACACCCTCCCCTCGCAAAACCCACCACGCCACCATGACCATTTGCAACAACACCTCAATTACAACACCATGTATCATCAACATCATCATCCCTTTCATCACCAATTGCAAGGTGGTGGTGGTGGTGGTGGAAATGGAACTCACCACTACAATTATCATGACATGAGTACTTCAGGATCTGGCTCGGTCTATTACCTCAGGTCAACACCCCAACCAATGCCATTGACTGATCACCAAATCTTGAACACAAGACAACAACAAGAGGGAGGCAATGTTTCTCATCCTCCTATAATCATTGATTCTGTTCCAGTTGCTCACCACCATCATCATCACCACCACCATGGTGGCAAGAGTGGTTCTAGTACTAGTACTAGTCCTAGCACTGCAGGCAAAAGACTGAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGATCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGTGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACAACCACCTCTTCAGCTTTTAAGGGAAGACTTACTTTCATCACCATCATCAGCGAGGTTTGGGGATCAGAGAGGGGAACCTTCAATGCTTTTTGATCTGGATCCATCTTTGCAATACCGGCAGTGA 1662 0.4627 MELMQEVKGYSDSREEEEEEEEAAEEIITREDSSSKHHYPFSSTSLSLSSAPSISNYTSTTAAARPHHHHHHHHVINIPHQQNPWLGMNIHDHDHHLQSPETTESHNSSSGLGLLHQHQDAAGSNFIISNHHHHHHHTTKQLDFMDLTLGSSKDEGNLQGSGGGASSVFPHHASGSSSADGNVNNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHQGPDPSSALFTPFFLPNQPHFIRWGATGRLYTLPSQNPPRHHDHLQQHLNYNTMYHQHHHPFHHQLQGGGGGGGNGTHHYNYHDMSTSGSGSVYYLRSTPQPMPLTDHQILNTRQQQEGGNVSHPPIIIDSVPVAHHHHHHHHHGGKSGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHVTMANSNSPPSSSQPPLQLLREDLLSSPSSARFGDQRGEPSMLFDLDPSLQYRQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00515 553 CDD B3_DNA 194 283 IPR003340 GO:0003677
Phco1g00515 553 SMART B3_2 196 301 IPR003340 GO:0003677
Phco1g00515 553 MobiDBLite consensus disorder prediction 13 27 - -
Phco1g00515 553 Gene3D - 190 308 IPR015300 -
Phco1g00515 553 MobiDBLite consensus disorder prediction 1 54 - -
Phco1g00515 553 FunFam B3 domain-containing protein 189 309 - -
Phco1g00515 553 MobiDBLite consensus disorder prediction 441 465 - -
Phco1g00515 553 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 491 IPR044800 GO:0003700
Phco1g00515 553 MobiDBLite consensus disorder prediction 38 54 - -
Phco1g00515 553 Pfam B3 DNA binding domain 196 300 IPR003340 GO:0003677
Phco1g00515 553 MobiDBLite consensus disorder prediction 84 113 - -
Phco1g00515 553 Coils Coil 7 27 - -
Phco1g00515 553 MobiDBLite consensus disorder prediction 522 553 - -
Phco1g00515 553 ProSiteProfiles B3 DNA-binding domain profile. 196 301 IPR003340 GO:0003677
Phco1g00515 553 MobiDBLite consensus disorder prediction 367 389 - -
Phco1g00515 553 MobiDBLite consensus disorder prediction 153 195 - -
Phco1g00515 553 SUPERFAMILY DNA-binding pseudobarrel domain 192 294 IPR015300 -
Phco1g00515 553 MobiDBLite consensus disorder prediction 153 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00515 Phco-Chr1 4093005 4094666 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco1g00515 B3 2.9e-28 CL0405