Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00512 ATGGGTATTGTTGGGGTTGGTTTTCGTCCTACAGAACAAGAACTTGTCGATTTCTACCTCAGACACAAGCTGCTCGCTGATGATTCTCGTGCGCACCTCATCCCTGTCATTGACCTCTGCGATGTGGAACCTTCGGATGTACCAGTGATACTTGCAAGATCACCGATAAGATTTGGTGACCCAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAAAAGTAAAAGGGTTAACAGGAAAACCAAGTGTGGCTTCTGGAAAGCAACCGGAAAAGACCGTAACATCAGGAACGTCGACACCAACACTCTCATTGCCACCAAGAAGACTCTTGTTTACTACGAAGGCAGTGTTTCCCGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCAAGAGGGCTTTTGTTTTATGCCGCTTGATGAGGAAACCTGGGAAAGCAACTGAAGGTGGAGCTGATCCACTAATCTGTGATGAAGGGGAGCCCAGTAAACTCAAGGTTTGTGACTATGGAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTTCTTTTACAGGAGAGGAAACAATTTTCCAGACTAGGCCTCAGGCAGAGACATACTTCTCCCAAAACCAACAGTCTCCAATACAAGAAGCATATTTTCCAAACTACCCATTTAACAATGCCTATTTTAGAAATGAAAATAACTTTATGCAGATTGAATTTGAAACTACAAAGGAAGATGACTTCCTCAATCAAATTATAGCTGATGAAAGTTTAGTTATTGATGAAGAAAGTATCTCTTTTATCAATAATACTATGGAATGGGAGACATGGCAAAAGGATATTGATGATGCATCAACAAATCAAGAAACAATAAATAGTACATTTCAAGATAATTTCTCTGGAGTAGAATCATCCACGGACTCAATTCAAAATAGAATTTCAGATATCAATTATTGTGAAATTTCCAGTTCTCAATCCACTTCATGGACTATGGAAGATTAA 1017 0.3972 MGIVGVGFRPTEQELVDFYLRHKLLADDSRAHLIPVIDLCDVEPSDVPVILARSPIRFGDPEWFFFSPVDFKYSKSKRVNRKTKCGFWKATGKDRNIRNVDTNTLIATKKTLVYYEGSVSRGVKSNWVIHEYHAVTFHESKRAFVLCRLMRKPGKATEGGADPLICDEGEPSKLKVCDYGNQATAEGIPSEGSFTGEETIFQTRPQAETYFSQNQQSPIQEAYFPNYPFNNAYFRNENNFMQIEFETTKEDDFLNQIIADESLVIDEESISFINNTMEWETWQKDIDDASTNQETINSTFQDNFSGVESSTDSIQNRISDINYCEISSSQSTSWTMED 338
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00512 338 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 274 - -
Phco1g00512 338 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
Phco1g00512 338 Gene3D NAC domain 11 156 IPR036093 GO:0003677|GO:0006355
Phco1g00512 338 Pfam No apical meristem (NAM) protein 4 133 IPR003441 GO:0003677|GO:0006355
Phco1g00512 338 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco1g00512 Phco-Chr1 4061989 4064179 Dispersed/Tandem
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco1g00512 NAM 6.5e-27 No_clan