Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00511 ATGGAGGACATAATTTCCATACTTGATCACTTGCCTGTAGGATTCAGATTCCGTCCCACAGATGAGGAGCTTGTCAACCATTACCTCAAGCACAAGTTGCTGGGTGATGATTTCTCTGTCCAGTTCATTCCAGAGATCGACCTTTGCAGAGTGGAACCTTGGGACGTGCCAGGTAATGTAAACACTAAACACTATACTCTAAAAAACACGCCTTTCATCATGATGCTATCAAACCCATTTCACTGTTGTTTGATTCTTTTCTTCTTTCAATTTCTGATGCCAGCAAAATCAATATTCAAATCCGATGAGCCACAATGGTTTTTCTTCAGTTCTGTGGATTACAAGTACTCCAATAGTAAAAGGGTCAACAGGACAACCGAGCATGGCTTCTGGAAATCCACAGGAAATGACCGTAACATTAAGATTGGTGGCAGTAAAAATGTTATTGGGACAAAAAAGACTCTTGTTTTCCACAAAGGCCGTGTTCCCAGTGGTCAAAGGACCAACTGGGTTATTCATGAATATCATGCTCTTACCTCCCGTGAAAGCCAGAAGACTTACGTTTTATGCCGCTTGATGAAGAAATTTGAGAAAAAAAATGAAGGTGGAATTGATGCACCAAACTTCAATGGAGGCGAGCCCAGCATAAGCATGGTTTCTGAGTATGGAAATCAGGTACCAGCTGAAGAAATTCCATCTGCAGATATTTTACCTAGAATGACTGTGGACCCAATCTTTCCGGACGAGATTTTCTTCTCCCCAGTACAACAGCCTCCAGTTGGCATTGAAGTGGAAGGATTTTTCCCAAACTCCCCATCGCGCAATGCTTGTTTTGGAAATGAAAGCATCAATATGCAAATTCCATTTGGAGTTACTGATGATGAAGATGAGTTCCTAAATTCAATACTGGTTGATAATGAAGAGTTTGTTATCAATGAAGAAAGAAGAGACTGTTTTGTCAATTGTTCCACCCAACCAAAGTCATTGAGAAGGGTATACTATGCAAGCAGTGACACAGATGCTGAAGTTGTCTCTAATCTGCATGGCAACATTTGTTCTGGTGAATACTCTGTTCGTGGTGGCATGAGTAGTCTAGCTTCGAATCATGAAGCACACAAAGAAAAAAAGGAGAGTATCATTCAAGATGATTTCTGGGCAGTGGAGACATCCTCTTGTGACTCAACTGCAGATGAACCTATCGAAATTTCTAGTTCTGACTCCACTCCAACAAGATTGGAAAATCGTTATAATCTAAGACCAGACAACTTCACATTACAAAAAACTGTTGCAGGAAGACCTCAAACACAGAAGAAGGTTTCAAACAATGCAGTATCCCACATAGAGGCTCGGAAGGAATTAGTCACTGTGAAATCGGAGAAAGATCAGAAAAATGCTCAAAATACTAGTTCAAGAGGGATCCTCAAAATCAGAAGCCGTCAATCATCTAATGTCAATAGCAAAAGTTCTTTCTTTTACATGGAAACGACTTCATCAAACCAAAACCTATTTCCACGTTCAGTATATCTTGTCAATGTTGTCATAGGGATTCTGTTGTTAACAGTCATTAGTTGGGACGTATTATTATGTTAG 1590 0.4013 MEDIISILDHLPVGFRFRPTDEELVNHYLKHKLLGDDFSVQFIPEIDLCRVEPWDVPGNVNTKHYTLKNTPFIMMLSNPFHCCLILFFFQFLMPAKSIFKSDEPQWFFFSSVDYKYSNSKRVNRTTEHGFWKSTGNDRNIKIGGSKNVIGTKKTLVFHKGRVPSGQRTNWVIHEYHALTSRESQKTYVLCRLMKKFEKKNEGGIDAPNFNGGEPSISMVSEYGNQVPAEEIPSADILPRMTVDPIFPDEIFFSPVQQPPVGIEVEGFFPNSPSRNACFGNESINMQIPFGVTDDEDEFLNSILVDNEEFVINEERRDCFVNCSTQPKSLRRVYYASSDTDAEVVSNLHGNICSGEYSVRGGMSSLASNHEAHKEKKESIIQDDFWAVETSSCDSTADEPIEISSSDSTPTRLENRYNLRPDNFTLQKTVAGRPQTQKKVSNNAVSHIEARKELVTVKSEKDQKNAQNTSSRGILKIRSRQSSNVNSKSSFFYMETTSSNQNLFPRSVYLVNVVIGILLLTVISWDVLLC 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00511 529 Pfam No apical meristem (NAM) protein 12 176 IPR003441 GO:0003677|GO:0006355
Phco1g00511 529 Gene3D NAC domain 20 200 IPR036093 GO:0003677|GO:0006355
Phco1g00511 529 SUPERFAMILY NAC domain 96 195 IPR036093 GO:0003677|GO:0006355
Phco1g00511 529 SUPERFAMILY NAC domain 8 60 IPR036093 GO:0003677|GO:0006355
Phco1g00511 529 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 276 - -
Phco1g00511 529 ProSiteProfiles NAC domain profile. 11 195 IPR003441 GO:0003677|GO:0006355
Phco1g00511 529 MobiDBLite consensus disorder prediction 457 480 - -
Phco1g00511 529 MobiDBLite consensus disorder prediction 460 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00511 Phco-Chr1 4055902 4058387 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco1g00511 NAM 1.3e-29 No_clan