Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00496 ATGGTTTTGGATCCAAGGCTGGTGCTGCTAGTGTTCATCAGCGCTTGCATTTTGGCCATCAATGGTGGTGAAACAGATCCAAATGACGTTGCTTCTCTGAAGGCTATGTTTCAAAATATGAACTCAACATCCCAGCTAAATTGGAATGGGGATGATCCTTGTGGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATCAAGTTACCTGGTCGTTCACTTTCCGGATCTTTGGGTTACCAGCTAGAATCCATGTCATCGGTTACAAACCTAGACTTGAGTAACAATAATCTTGGTGGCGCCATACCATACCAACTTCCTCCTAATCTACAGTACTTAAATCTTGCCAATAATAATTTCAATGGGGAAGTCCCTTATTCTCTTTCTCTGAAGGCTTCGCTTGTAGTCCTGAATCTTGGACACAATCAGCTACAGCAAGCACTTACTGTTGATTTTCAAAAGCTTTCTTCCCTCTCTACATTGGATCTTTCATTCAATTCTTTGACTGGTAACCTGCCTCAGACTGTGAGCTCACTTTCCAGCATAAGCACCATGTATCTGCAAAACAACCAGTTTACCGGCACCATTGATGTCCTTGCTAATCTGCCTCTGGAAACTCTGAATGTGGGAAATAATCATTTTACTGGCTGGATACCAGAACAATTGAATAACATAAACCTGCAAAAGGATGGTAATGATTGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGGACACCTCCAATAGTAACAAGAAATCGAAATCACAGATCTGGTGGACAGACCCCATCAGATGCTGGCTCAAGCAACGATGGAGGCAAAAAATCTGGTATTGGAGGTGGTGGCATTGCTGGAATAGTGATCTCCATCTTGGTTGTTGGGGCAATAGTAGCATTCTTTCTAGTGAAGAAACGATCCAAGAAGTCGTTTAGTGATATTGAAAAGCTTGACAATCAGCCCTTGGCTCCTCATACTTCACATCATCATGAAATCAATTCAATGCAAACCTCATCTGTAATTGACTTGAATACATTTGATACACCAGTGGCCCCAATAAGTCTTAAACCTCCACCTATTGATCGTCATAAATCATTTGATGAGGATGAGTTTTCAAAGAAGCCCACTACAGTCATTAAGCCCACTACAGTCAAGAAGACCGTCACAGCTCCTACAAATGTAAAATCTTATTCTATAGCTGACCTGCAGATTGCTACGGGAAGCTTCAGTGTGGATCAACTTCTTGGTGAGGGGTCTTTTGGACGGGTGTATCGGGCTCAATTTGATGATGGAAAGGTTCTTGCTGTCAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGAAGATTTTCTGGAACTGGTTTCAAGCATATCCAATTTGCACCATCCCAATGTAACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAACACCTACTGGTCTATGAGTTTCATCAAAATGGATCACTGCATGACTTCCTTCACCTACCTGATGAGTATAGTAAACCATTGATATGGAATTCACGTGTGAAGATTGCTTTGGGGATTGCACGGGCTTTAGAGTACCTACACGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCAGCCAACATATTGCTTGATACAGATGTTAATCCTCATCTTTCCGACAGTGGATTGGCTAGCTATATTCCAAATGCAAATCAGGTACTGAACAATGATTCTGGATCTGGATATGAAGCTCCCGAAGTTGGCATGTCTGGCCAATATACTCTTAAGAGTGATGTCTTTAGCTTTGGAGTTATCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGGGTTTGGTTCGATGGGCAACACCTCAGCTCCATGATATCGATGCTCTGGCTAAAATGGTTGATCCTGTATTAGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCAGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAGTTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAGCGAACTAACATGAGTAAGAGGACGACGTTTGGAACTGATCAAGGAGGATCCAACCGAGGGGGAGATAACCAAGAATCACAAGACATGTAA 2157 0.4312 MVLDPRLVLLVFISACILAINGGETDPNDVASLKAMFQNMNSTSQLNWNGDDPCGQSWQGITCSGNRVTEIKLPGRSLSGSLGYQLESMSSVTNLDLSNNNLGGAIPYQLPPNLQYLNLANNNFNGEVPYSLSLKASLVVLNLGHNQLQQALTVDFQKLSSLSTLDLSFNSLTGNLPQTVSSLSSISTMYLQNNQFTGTIDVLANLPLETLNVGNNHFTGWIPEQLNNINLQKDGNDWSSGPAPPPPPGTPPIVTRNRNHRSGGQTPSDAGSSNDGGKKSGIGGGGIAGIVISILVVGAIVAFFLVKKRSKKSFSDIEKLDNQPLAPHTSHHHEINSMQTSSVIDLNTFDTPVAPISLKPPPIDRHKSFDEDEFSKKPTTVIKPTTVKKTVTAPTNVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSEDFLELVSSISNLHHPNVTELVGYCSEHGQHLLVYEFHQNGSLHDFLHLPDEYSKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKSANILLDTDVNPHLSDSGLASYIPNANQVLNNDSGSGYEAPEVGMSGQYTLKSDVFSFGVIMLELLSGRKPFDSSRPRSEQGLVRWATPQLHDIDALAKMVDPVLEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTTFGTDQGGSNRGGDNQESQDM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00496 718 SUPERFAMILY Protein kinase-like (PK-like) 391 684 IPR011009 -
Phco1g00496 718 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Phco1g00496 718 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515
Phco1g00496 718 PRINTS Leucine-rich repeat signature 159 172 - -
Phco1g00496 718 PRINTS Leucine-rich repeat signature 92 105 - -
Phco1g00496 718 Gene3D Ribonuclease Inhibitor 29 134 IPR032675 -
Phco1g00496 718 MobiDBLite consensus disorder prediction 695 718 - -
Phco1g00496 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 249 - -
Phco1g00496 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 689 IPR046959 -
Phco1g00496 718 Gene3D Transferase(Phosphotransferase) domain 1 491 705 - -
Phco1g00496 718 ProSiteProfiles Protein kinase domain profile. 412 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00496 718 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Phco1g00496 718 Gene3D Ribonuclease Inhibitor 135 240 IPR032675 -
Phco1g00496 718 Pfam Protein tyrosine and serine/threonine kinase 414 684 IPR001245 GO:0004672|GO:0006468
Phco1g00496 718 Gene3D Phosphorylase Kinase; domain 1 374 489 - -
Phco1g00496 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 490 698 - -
Phco1g00496 718 MobiDBLite consensus disorder prediction 255 275 - -
Phco1g00496 718 SUPERFAMILY L domain-like 45 228 - -
Phco1g00496 718 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 377 489 - -
Phco1g00496 718 MobiDBLite consensus disorder prediction 232 278 - -
Phco1g00496 718 CDD STKc_IRAK 418 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00496 Phco-Chr1 3935165 3942684 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Phco1g00496 PK_Tyr_Ser-Thr 1.5e-41 CL0016