Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00492 ATGAATACCATTCTCACCTTCCTCACAGCCATTGCTTTTGTGGCTCAATCATTCCAAAACTACATCATCCAGAGGCTGCACACAATCTACAAGCATTGTGGATATGATGATGCAGTCAAGGAAAAGGGAGATCATGAAATGGATTATTGTTCAGTGTGTTTAAGCCAAATTTGTGATGGGGAAAAGGTTAGGTCTCTACCAGTATGCAATCACAGGTACCATGCTGATTGTATTGGTGCTTGGCTTAAGAACCATACCACATGCCCTCTTTGCAGGAACAAAATCACTGATCATATCCTCCAAAAGCACAAACAGGTGAAGAGCTTAGGAGAATCTATGTTCAATCTCATACAGAGTTTCTCAGATCTATTGGTAGCTATTCTCTACAAGCTTCTTCCATCAAGCATCACTGAGAGTTTCCCTTTGGTTCATTGA 435 0.4092 MNTILTFLTAIAFVAQSFQNYIIQRLHTIYKHCGYDDAVKEKGDHEMDYCSVCLSQICDGEKVRSLPVCNHRYHADCIGAWLKNHTTCPLCRNKITDHILQKHKQVKSLGESMFNLIQSFSDLLVAILYKLLPSSITESFPLVH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00492 144 SMART ring_2 50 91 IPR001841 -
Phco1g00492 144 SUPERFAMILY RING/U-box 49 98 - -
Phco1g00492 144 CDD RING-H2_PA-TM-RING 50 92 - -
Phco1g00492 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 98 IPR013083 -
Phco1g00492 144 Pfam Ring finger domain 49 92 IPR001841 -
Phco1g00492 144 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
Phco1g00492 144 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 96 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00492 Phco-Chr1 3915006 3915440 Dispersed/Wgd