Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00476 ATGTTTCCATTCCATCCTCATGGAGCTCCGAAACATGCTTGCACTCTTCTCGCTGTAACCTGTGGCGCAAGTTTCGCTGAGCACAAGGCCTCACAGAATCAGCACAAATATCCTTTTCCCGAGCTAGTTTCCGCGGGGCGTCTTGAGGTTCAAACTCTTCGGAATCCGGATAAGGAACAGTTTAGGAAAGTGCTGGAGTCGTATCAACCGAATTTTGTTTATTTCCAAGGAGAGCAGCTAGAGAATGACAAAGTTGGTTCACTGGTTTGTCAAGGTTTGGAATTATCGACTTCTGAGGATATCATAGAGCTCTTTGGTTCCACATTGCCGACGGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCTTATGTTATATTTTGGAAGAATGCCTTTTTTTCTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTTGTACAGAGTTCATCTACACATACCTGGGATGCTTTTCACCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAATCAAGTACTTTCTACTGACAGCCATGATGCTATTAGTGAGATGGGGCCACACCTTCTTGGTGACTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGATGAGGAAGATGATGATGAAAGTTCCTCAGGCACGCTGCCTGCCATTAAGATACATGAAGATGAAGTGAACTTGAGATTTCTTGTCTGTGGTGCACCTTCGACTGTTGACGAGTCATTGCTAAGATCTTTGGAGGATGGACTCAGAGCTCTCTTAACTATTGAAATCCGCGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCACCACCTCTTCAGGCAGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTTTGGTATCGGGCAGTGCACAAACTTGTTTTAATGATCAGCTCCTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCACGCGCAACTCAACAATGAGGGAAACAAACAGAACATCTCTGAACCTCGCAGATCTGCATCTATTGCCTGTGGATCACCTGTATTTGAAATTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGTATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGACCGCCTACTTTTCTTCTATCAAAGTTGTGAGAAAGATAGTGGTACAAGCAAAAATAATATAATATTTGGCAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTAGAAGAAAAAAGTGTGAATCAAGCCAAGGGGCTAGCCCTGGTCTTCATGAAGGTGTCTTTGCGGGGCCCACCCCTGTTTATAAAGTAAATAAAGAGGAAAAGGATAGAAAAATGGCAAATGGCATTAGCACCCCATTAGCTCCTGCTAGACAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGCCGCCATAGAATGACACCTTTTTGTGGACCTTCTGAGACAGATGGTTTTGATGGTGGCCAAGTAGAGCCTAATTTGCCACTTGTTGCCCCAACAAAGCGTAGTATTGGATCAACTTCTGCAACACATAGAAAATCATTTTCAAGTGCAGCTCAATCTAAGCAGGTTATTTCGTTGAACCCATTGCCTCTTAAGAAGCATGGTTGCGGTAGAGGCCCAGTACAGACGTGCTCTGAGGAGGAATTTCTTAAAGACATCATGGAGTTTCTGATTCTCCGGGGACATAATCGATTAATTCCTCAAGGAGGGCTTACTGAGTTCCCTGATGCCATACTCAATGGAAAACGTCTTGATCTCTACAATTTGTATAAAGAGGTGGTTACGAGGGGAGGATTTCATGTTGGCAATGGTATCAACTGGAAGGGGCAAATCTTTTCAAAGATGCGGAATTACACAACTACCAATAGAATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCACATGACGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTAGGCGCATTTAAGGATTATGCAAAAACAGATGGGTTAGAATACATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGCAAATGGGTATTCTCAAGGGTCAATGTCTTCACGACACCTTTGA 2346 0.4309 MFPFHPHGAPKHACTLLAVTCGASFAEHKASQNQHKYPFPELVSAGRLEVQTLRNPDKEQFRKVLESYQPNFVYFQGEQLENDKVGSLVCQGLELSTSEDIIELFGSTLPTAVYLEIPNGESFAEALHLKGIPYVIFWKNAFFSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLSTDSHDAISEMGPHLLGDCLKINVDPPEIDEEDDDESSSGTLPAIKIHEDEVNLRFLVCGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRRSASIACGSPVFEICMKLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDADRLLFFYQSCEKDSGTSKNNIIFGSPPGWLKPPPPRRKKCESSQGASPGLHEGVFAGPTPVYKVNKEEKDRKMANGISTPLAPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGGQVEPNLPLVAPTKRSIGSTSATHRKSFSSAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDIMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRHL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00476 781 CDD PHD_ARID4_like 705 756 - -
Phco1g00476 781 SMART bright_3 596 700 IPR001606 GO:0003677
Phco1g00476 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Phco1g00476 781 CDD ARID 597 695 - -
Phco1g00476 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 778 IPR042293 -
Phco1g00476 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Phco1g00476 781 SMART ARID_2 592 695 - -
Phco1g00476 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Phco1g00476 781 Gene3D - 593 698 IPR036431 GO:0003677
Phco1g00476 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Phco1g00476 781 MobiDBLite consensus disorder prediction 442 472 - -
Phco1g00476 781 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00476 Phco-Chr1 3774698 3782289 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco1g00476 ARID 1.8e-14 CL0123