Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00447 ATGAAAAGGTACCATTGCGTGCGTCATCTTTATATTCCCGATATTGTCCTCCATCATATACCCGATATTCAACCAACAATTTATAGAAAGGAAGAGGTGAGACCAGACAATAACAGAGAAGGTCCACCAACTGAGCCGGTGACGGAGTTTCGCGCACGTCCAATTCACTTCTGCCACGTCACCAACACTTCCTCTGCGCTCTCCCCACGTGTCGACGGTCACCGTCAACTCACTCCATTCCGTCAAACCAAACCCCCAAAAAAGATCGGCGGCGAGGAGGATATGGACGACGACGAAGAGATCCAGTCGCATCCGTCGCCGGCGAGCGGATCCCCGGTGTCGTCTCCGGGGGCCAACGGACGGATAACGGTAACGGTCGCGGCGCCGGCGCCGTCGAATAGTTTGGCATTAGCGCTTCCGATTCAGCAGCCGTCGAAGGGGAACGGTGGGGGAGGAGGCGGCGGCGGTGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTACTGATCGACGCGTGGGGAGAGAGGTACCTGGAACTGAGCAGAGGAAATCTGAAACAGAAGCACTGGAAGGAGGTGGCGGATATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACGGATATTCAGTGCAAAAATCGGATCGACACCGTAAAGAAGAAGTATAAATCGGAGAAGGCGAAGATCGCCGCCGGCGCCACCAGCAAGTGGCCGTTCTTTGACCGACTGGACAAATTAATCGGCCCAAGCGCCAAGATCCCCGGCGCCGGCGGCTCCTCCGGTACCGCCGGCACCAGCGCTGCCGGAAACAGTATTTTACAGCCGCAGAAAGTGCCTTTAGGGATTCCGGTCGGCGTTCGCGACGGCGTGAATCACTATCACCGTCCACAAAGGCCGGCGCAGCAGCAACAACAGCAGCCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGATCCACCGTTGGACTCCGATTCGGACGAGCGTGGCGCGTCGTCTCCAGCCTCAAGCGACAGTTTTCCGCCGGAGAGTTTCGAGCGGAAGAGGCCGCGGGTGATGAGTTCGAACGCGGGGAAAGGAAGCGAAGGAAGACGGAAGGCGAAGGGGTGGGGAAGCGCGGTGAGGGAACTGACGCAGGCGATTCTGAAATTTGGCGAGGCGTATGAACATGCGGAGAGCTCGAAGCTGCAGCAGGTGGTAGAGATGGAGAAGCAGAGAATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGGATGCAGTTTTTCATGAAGACACAATTGGAGATTTCGCAACTCAAGCTTGGAAGAAAAGGTGCTAATCCTAGCAACAATCACCATAGCACCAACATCAATAACAATAACAACAATCATAACAATAATAGTGACAGCGAGTGA 1410 0.5596 MKRYHCVRHLYIPDIVLHHIPDIQPTIYRKEEVRPDNNREGPPTEPVTEFRARPIHFCHVTNTSSALSPRVDGHRQLTPFRQTKPPKKIGGEEDMDDDEEIQSHPSPASGSPVSSPGANGRITVTVAAPAPSNSLALALPIQQPSKGNGGGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFFDRLDKLIGPSAKIPGAGGSSGTAGTSAAGNSILQPQKVPLGIPVGVRDGVNHYHRPQRPAQQQQQQPVPLKNQKIQFRRRDPPLDSDSDERGASSPASSDSFPPESFERKRPRVMSSNAGKGSEGRRKAKGWGSAVRELTQAILKFGEAYEHAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPSNNHHSTNINNNNNNHNNNSDSE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00447 469 FunFam trihelix transcription factor ASIL2 163 228 - -
Phco1g00447 469 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 119 439 IPR044823 -
Phco1g00447 469 MobiDBLite consensus disorder prediction 141 160 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 258 378 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 65 120 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 300 316 - -
Phco1g00447 469 Pfam Myb/SANT-like DNA-binding domain 160 250 IPR044822 -
Phco1g00447 469 Gene3D - 163 228 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 439 469 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 104 120 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 318 332 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 441 469 - -
Phco1g00447 469 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00447 Phco-Chr1 3550356 3552013 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco1g00447 Myb_DNA-bind_4 1.1e-25 CL0123