Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00439 ATGGCGACCAAAGATTCTCCTAAGGAACTGCTCGATATCACCACCGAATCCGAAGGATCCGACCCGGATTCCGACTGTGATGATTCGGGAGAAGACCCCGATTACGACGCGCTCGAAGAAACTCATAGAAAGTTGTCAAACCTCTCACTTAAGCACAAGGCAAAAGCGCGCTTTATCGAGGAGAATGGTCAAGGTGAGGAAGTGTTGGTGGTCACTGCATCTGTAAATGATGGAGAGACTTTTGGGAAAGTTCAAAAGTTATTCGAAGAGGGATTGTTGAAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTTAGGCTAACTGGAAACAAGGACACACTTATACAACGCATAAGGGAGCACTTTGAGATTTTAAATGGAGGGGAGCAAAAGTATCCGCCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATCGCATCCAGGAGTGCTAGTGGTCCACCTTGTGGCACAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGTTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGCTGAAGACTTTGAGACAGAAATGGGAAGATGAAGCAAAGAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATACATTGCTAGGGCAGATAGAGAATCAAGGATTCAAGAAAAGGAGAAGAGGAAAAATAATAAGGAAAATAGGGTCTACAAAAAGGAAGCAAGGAACCAATGTCAACCTCAAGCAACAAATCTAGTCATTAATCCAGGAAAACCCGAATTTCCATCTCGAAATTCAGGGTTACCTGTCAATATAATGAACGAAAGGTCCTCTATTTTAAATAATCCAGCAGCAATAGGAAGAACATCATTTGCTGTTCATAGTAAGCCTAATCAGCAAGCTTTAATTGGTGGTGTGAGGGGGGCTGAACTTGGTGCAAACTATAATTATGCAGACCCCCATTTCAGAGAAAACCTACCTAGTATTGTGAACTGCAACCCTAACATGGCCGAGAAGACAACTGGATTTACAATGAGAACTCATCATAGGAAGCCTTTGGCATATGCCCACCATCACCCATTGATGGCCTCCAACAGAGAAAGCTATAACCCATTCATGGCCTCCAACAGAGAAAGATATAAGGTAAATCAGGTGTGTAGACATTATTCCCGTGGAAGGTGCTATTTTGGGGACAACTGCAAATTCTTACATGATTTTAGAGACAGGGAATGCATGAATTAA 1371 0.4238 MATKDSPKELLDITTESEGSDPDSDCDDSGEDPDYDALEETHRKLSNLSLKHKAKARFIEENGQGEEVLVVTASVNDGETFGKVQKLFEEGLLKKLKVDECKLYLRKNGLRLTGNKDTLIQRIREHFEILNGGEQKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGTRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAKRQKILMEKHSRGYIARADRESRIQEKEKRKNNKENRVYKKEARNQCQPQATNLVINPGKPEFPSRNSGLPVNIMNERSSILNNPAAIGRTSFAVHSKPNQQALIGGVRGAELGANYNYADPHFRENLPSIVNCNPNMAEKTTGFTMRTHHRKPLAYAHHHPLMASNRESYNPFMASNRERYKVNQVCRHYSRGRCYFGDNCKFLHDFRDRECMN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00439 456 PANTHER SAP DOMAIN-CONTAINING PROTEIN 16 290 - -
Phco1g00439 456 MobiDBLite consensus disorder prediction 262 283 - -
Phco1g00439 456 MobiDBLite consensus disorder prediction 1 15 - -
Phco1g00439 456 Gene3D - 416 456 - -
Phco1g00439 456 SMART sap_9 93 127 IPR003034 -
Phco1g00439 456 SUPERFAMILY SAP domain 83 128 IPR036361 -
Phco1g00439 456 ProSiteProfiles IQ motif profile. 241 270 IPR000048 GO:0005515
Phco1g00439 456 MobiDBLite consensus disorder prediction 262 286 - -
Phco1g00439 456 Gene3D SAP domain 93 132 IPR036361 -
Phco1g00439 456 Coils Coil 258 285 - -
Phco1g00439 456 SUPERFAMILY CCCH zinc finger 424 448 IPR036855 GO:0046872
Phco1g00439 456 Pfam CCCH-type zinc finger 428 448 IPR041367 -
Phco1g00439 456 SMART c3hfinal6 424 449 IPR000571 GO:0046872
Phco1g00439 456 MobiDBLite consensus disorder prediction 1 36 - -
Phco1g00439 456 ProSiteProfiles Zinc finger C3H1-type profile. 423 450 IPR000571 GO:0046872
Phco1g00439 456 Pfam SAP domain 93 127 IPR003034 -
Phco1g00439 456 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Phco1g00439 456 MobiDBLite consensus disorder prediction 16 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00439 Phco-Chr1 3496412 3499408 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco1g00439 SAP 6.8e-10 CL0306