Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00433 ATGGTTGTCATCAATATCATCCTGTCTATAGACGCTGTTATATATTTATTAAATATTTCATTGCACAATCAATCTGGTACTCAAACCCATTTTCCCGGAAAAAATTCTTCGAAGAGAAAAAGAGAAGAGGAAAAGGCAGAATCAGCTGAAACAGCAGCAGCAGCAACAACAAACTCTTATGCAGCAAGCCCTTCTCCAACAGCAGCCTCTACCATCCTGACCTCCGTGCTGTACCTCAGTGACCAGAAAACAAAGGGGGTTTCAGGTTACACGGTCTCTATCAGTGTCGACATTGTGATCACCATTTCAAGGTATGTTGTGCTATCATACTTAGCGTCATTAGGAACAATGAGCATTTTGCAAGCGAAACGCAAACGCCAAGACCTGGCTTCGACACTCTCTGCCTCAATGACAAACGAGGAGAGGGTGGTTTACAACATCATTCGTGGGAAGAAGGAGATGGGGATATGGCAAGGGGATATCAAAAGAGAAACTAACATTCCTGACAGCATGTTGAAGAAATCCATCAAGTTGCTAATCTCCAAGACTCTTATCAAGGAGGTTGTAAACATCCAAAACAAATCCAAGAAGGTGTTGATGGCCATGGAATTCGAACCCTCTAAGGAGATCACTGGTGGAGAGTGGTATACTGAAGGTAGGCTTGACACACAGCTCATTGATGCTCTGTCTGATGTCTGCTTGAAGCTTATTTCCCGAAAAAAAGTCGCCACTCGGGATGCGATCCTGGAGTGGACTAGAACTTTAGGGAGTGAGGTTTTTCCCGGTGGAGTCAGTTCTGGACAGGTGGAACAAATTTTGAAAGTTTTGGTTATGGAAAATAAGGTACAAGAGGTGAACAGCACTGGCTTTGGGGATTTTTCAACTGTTCCTGCTGGTGAAGTTTGCTTTAGATTGGCGAAGAAGGTGGGCACCAATGTTAAAGCTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCTAGGATTAAATTTTGTACTCCCAATGGTGTTATATCCCCAACAACTTGCCAGTATTATCAGAAATGTGCTTCGCATTCTGTTTTGACTATTGGTCTCTACCAAGATCCTCATGCTTCTGCCTCCCTTCACTGCAGTGCCTGGGAACTTGTTTGCAACATCAAGAGGATGGCTCTAGTCAACCGTGCAGGGAATACAGAGGAGCCATGGTCATTGATGTTGACAGGCTCTCATCCCTTGTTAAGATGTCATTGTTCCATAATTATGCTTAACATGTCAATCTTCTCAAAGAGGCTCTCATTGATATCTGGATATGATGAGCTTCCTCGGTTTCAGTCTGGAGTTATATTGGAAATATCCCGTTTGGATGCTTGGTATCCTGACAAAGATGACATCTATTTTGGAGTACTCAAAGGACATTGTTATAGGTGCTGCATCCCTGAAGTTATTCCTTATTGCATGCAAGTAAAGTTATGCTATTACATATATCTACCTTTTTCTGTGGATGAAAACTACTAA 1497 0.4282 MVVINIILSIDAVIYLLNISLHNQSGTQTHFPGKNSSKRKREEEKAESAETAAAATTNSYAASPSPTAASTILTSVLYLSDQKTKGVSGYTVSISVDIVITISRYVVLSYLASLGTMSILQAKRKRQDLASTLSASMTNEERVVYNIIRGKKEMGIWQGDIKRETNIPDSMLKKSIKLLISKTLIKEVVNIQNKSKKVLMAMEFEPSKEITGGEWYTEGRLDTQLIDALSDVCLKLISRKKVATRDAILEWTRTLGSEVFPGGVSSGQVEQILKVLVMENKVQEVNSTGFGDFSTVPAGEVCFRLAKKVGTNVKAGAMASIPCGVCPRIKFCTPNGVISPTTCQYYQKCASHSVLTIGLYQDPHASASLHCSAWELVCNIKRMALVNRAGNTEEPWSLMLTGSHPLLRCHCSIIMLNMSIFSKRLSLISGYDELPRFQSGVILEISRLDAWYPDKDDIYFGVLKGHCYRCCIPEVIPYCMQVKLCYYIYLPFSVDENY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00433 498 MobiDBLite consensus disorder prediction 51 66 - -
Phco1g00433 498 MobiDBLite consensus disorder prediction 26 66 - -
Phco1g00433 498 MobiDBLite consensus disorder prediction 35 49 - -
Phco1g00433 498 FunFam DNA-directed RNA polymerase III subunit RPC6 138 203 - -
Phco1g00433 498 Coils Coil 39 59 - -
Phco1g00433 498 SUPERFAMILY "Winged helix" DNA-binding domain 134 203 IPR036390 -
Phco1g00433 498 PANTHER RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED 120 348 IPR016049 -
Phco1g00433 498 Gene3D - 114 196 IPR036388 -
Phco1g00433 498 Pfam RNA polymerase Rpc34 subunit 134 246 IPR007832 GO:0005666|GO:0006383
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00433 Phco-Chr1 3448325 3453595 Proximal