Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00430 ATGCAGGGGTCACAAGAAAAAACAAGGGAAAAACGAAAAAGTAGCAGAAGCAATGACCCGGAAAAAAAAATCACAATCACATTCCTTAGTTGTGAATACGCCCTGAGGCACCAAATTTTGAGCAAAGTAATGGCCATAGCTCCGGCAATAATTCTCCAGCCAACTCTCATGATCATTGTCACTTTGCCTGTGATATATTCCATGACAGAAGCTGAAGCTTTGGTGAGTCTCAAAAGTACTTTCTCCAACGCTGAAGTTTTGGATAGTTGGGTGGCTGGCTCTGCACCTTGTAGTGTAGAAGATCAATGGGAAGGTATTGTTTGCAACAATGGCCTTGTCACGGGGCTTCGGCTTGGAGGAATAGGGTTAATCGGGGAAATACACGTTGATCCATTGCTTGAACTCAAGGGTCTTCGAACTATTAGCCTTAACAACAATTCTTTCTCAGGGTCCATGCCAGAGTTCAACCGAATAGGGTTCTTGAAAGCCTTGTATTTGCAAGGAAACAAGTTTTCTGGGGATATTCCTTCGGAATACTTCCAGAGAATGAAGTCTTTGAAGAAAGTGTGGCTTTCTGATAACCAATTCACGGGGAGTATTCCAAATTCATTGACCGAAGTTCCCAGTCTTGTGGAGTTGCACCTTGCAAATAACCAGTTTAGTGGAGCCATTCCTGATTTGAATAACCCATCATTGGAGAAATTAGATGTTTCCAACAACAAATTGGAAGGTGAAGTTCCAGCTAGTTTGTTGAGGTTCAGTGAGAGCTCGTTTTCAGGGAATTCTGGTCTTTGTGGTCAGAGGGCTGGCAAACCATGTAAACAGCCAATGGAGACCCCAAGTCCTGCTCCTATGCATGCATCAGATGCACAAGATAATGTTGGTGATGATGCGCCTGTTCCACATAGTAGTACCTCATGGGAGGTTACTGGCATTATAATAGCGAGTGTAGTGCTTGTCTCAATGGTTGTATTTTGTATTATGAGAACAAGGCGAAAGAAGGAGGAGGAGAACTTTGATGTTTTTGGAAATTATACTAATGGTGGTTCAGTGGAAGTTCAAGTGACTGCACCGGTGAAAAGGGATATGGAAGCAAGTACAAGTGCACCAGTTAAAAAATCATCATCCAGAAGGGGGTCTACAAGTTGTCAAAGTAAAAGCGTTGGAGAACTTGTGATGGTAAATGATGAGAAGGGTGTGTTTGGGTTGCCAGATTTGATGAGGGCAGCCGCGGAAGTGCTGGGAAATGGAGGCTTTGGATCTTCCTACAAAGCCGTCATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACTAGAGAGATGAATGCTTTGGAAAAAGATGGTTTTGATGCAGAGATGAGGAAGCTTACAGCGCTTAAACACTGGAATATATTGACCCCTTTAGCTTACCATTTCAGAAGGGAAGAGAAACTAGTGATCTCTGAGTATGTTCCCAGAGGCAGTCTACTGTTTTCACTGCATGGTGATAGAGGACCATCGCATGCTGAGCTAGATTGGCCTGCACGTATGAAGATTGTTCATGGAATTGCCGAAGGGATGCGTTATCTCCACAGAGAACTTGGTTCCTCGGATCTCCCACATGGTAATCTGAAATCCAGCAACGTTCTTCTGGGACCAGACAATGAAGCATTGCTCGTAGACTACGGGTTCAGCCACATGGTTAACCCTTCAAATGCTGCACAGACACTATTTGCTTTCAGGGCACCAGAGGCAGTACAACATAACCAAATTTCACATAGCTGTGATGTTTACTGTCTTGGGGTTGTGATACTGGAGATACTCACTGGGAAATTCCCTTCTCAATATCTTAGCACTGGGAAGGGTGGAACCGATGTGGTGCAATGGGTTGAAACAGCAATCTCTGAGGGGAGGGAGTCAGAAGTGGTTGATCCAGAAATTTCAAGCTCTAGGAATTCGTTAGGTGAGATGAAGAAACTCCTGCACGTTGGTTCTGCTTGCACCGAAAGTAACCCTGTGCAACGGTTAGGCTTGGAGGAAGCCTTTAGAAGGATAGAGGAGATAAGATTGGAGGGTGGCCATGGCCAAGAATCAAGAACAATAGAGGTGTTGCCATCTCATAGACATGGGTCTGCAGGTTCACAACAATTTGAGAACCAAGGGCCTTTTGACCACTCACACAGGAGACATGAAACAGATAGCTTCGGAAGTGAGGATAATATTGAACTTGGAGCTCCTAGGTAA 2223 0.4458 MQGSQEKTREKRKSSRSNDPEKKITITFLSCEYALRHQILSKVMAIAPAIILQPTLMIIVTLPVIYSMTEAEALVSLKSTFSNAEVLDSWVAGSAPCSVEDQWEGIVCNNGLVTGLRLGGIGLIGEIHVDPLLELKGLRTISLNNNSFSGSMPEFNRIGFLKALYLQGNKFSGDIPSEYFQRMKSLKKVWLSDNQFTGSIPNSLTEVPSLVELHLANNQFSGAIPDLNNPSLEKLDVSNNKLEGEVPASLLRFSESSFSGNSGLCGQRAGKPCKQPMETPSPAPMHASDAQDNVGDDAPVPHSSTSWEVTGIIIASVVLVSMVVFCIMRTRRKKEEENFDVFGNYTNGGSVEVQVTAPVKRDMEASTSAPVKKSSSRRGSTSCQSKSVGELVMVNDEKGVFGLPDLMRAAAEVLGNGGFGSSYKAVMANGVAVVVKRTREMNALEKDGFDAEMRKLTALKHWNILTPLAYHFRREEKLVISEYVPRGSLLFSLHGDRGPSHAELDWPARMKIVHGIAEGMRYLHRELGSSDLPHGNLKSSNVLLGPDNEALLVDYGFSHMVNPSNAAQTLFAFRAPEAVQHNQISHSCDVYCLGVVILEILTGKFPSQYLSTGKGGTDVVQWVETAISEGRESEVVDPEISSSRNSLGEMKKLLHVGSACTESNPVQRLGLEEAFRRIEEIRLEGGHGQESRTIEVLPSHRHGSAGSQQFENQGPFDHSHRRHETDSFGSEDNIELGAPR 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00430 740 SUPERFAMILY Protein kinase-like (PK-like) 412 678 IPR011009 -
Phco1g00430 740 MobiDBLite consensus disorder prediction 700 740 - -
Phco1g00430 740 MobiDBLite consensus disorder prediction 361 383 - -
Phco1g00430 740 Pfam Leucine rich repeat 161 220 IPR001611 GO:0005515
Phco1g00430 740 Pfam Protein kinase domain 412 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00430 740 Gene3D Ribonuclease Inhibitor 160 275 IPR032675 -
Phco1g00430 740 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 61 682 IPR046959 -
Phco1g00430 740 SUPERFAMILY L domain-like 71 255 - -
Phco1g00430 740 MobiDBLite consensus disorder prediction 368 383 - -
Phco1g00430 740 Gene3D Transferase(Phosphotransferase) domain 1 484 688 - -
Phco1g00430 740 MobiDBLite consensus disorder prediction 715 730 - -
Phco1g00430 740 Pfam Leucine Rich Repeat 231 251 IPR001611 GO:0005515
Phco1g00430 740 MobiDBLite consensus disorder prediction 258 302 - -
Phco1g00430 740 FunFam Nuclear pore complex protein NUP107 67 226 - -
Phco1g00430 740 Gene3D Ribonuclease Inhibitor 64 159 IPR032675 -
Phco1g00430 740 Pfam Leucine rich repeat N-terminal domain 70 109 IPR013210 -
Phco1g00430 740 Gene3D Phosphorylase Kinase; domain 1 377 483 - -
Phco1g00430 740 ProSiteProfiles Protein kinase domain profile. 408 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00430 Phco-Chr1 3416399 3419014 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco1g00430 Pkinase 1.5e-29 CL0016