Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00415 ATGCCTTCAAAGAGGCTTCAATGGAGATCCTTAGTACTTGGTTGTTTCAAGGCTAAAAACCAACAAACCTTGGAAGCTCCAAACATAGTTTCAAAGAAGTCGTCATCAAGTAGAATCTTTCTCTCTGATTTAAGCCTAAGCGATTATTCATCGCTCTCTATCATGAGTGATTTATCCAATTCTCTAGTGGGATCAAATCTTCGTATTTTCACCTACCAGGAGCTCAAAGAGATCACACACAGCTTTAGCAAATCCAACATTCTTGGGGAAGGTGGGTTTGGGAAGGTGTATAAAGGGTTTATTGATGACAGTTTTAAGCGTGGGTTGAAAGCTCAGGTTGTGGCAGTTAAGGCCTTAAACTTGGATGGAAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAGTTGAAGCATCGCCATCTGGTTAACTTGATTGGCTATTGCTGCGAAGATGAGTATAGGCTTCTTGTGTATGAATACATGGAGAGGGGCAATCTGGAGGAAAAACTTTTCAAAGGTTATGTAGCAGCCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCAGCTAAGGGTCTTATGTTTCTTCATGAAGAAGAAATACCAGTCATATATAGAGATTTTAAGTCCTCAAACATCCTACTGGACGCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCAATAGATGGACCAGAAAAAGATCAAACACACATTACAACTCGCGTTATGGGCACACAAGGTTATGCGGCCCCTGAGTACATCATGACAGGCCATTTGACAACCATGAGTGATGTATATAGCTTTGGAGTTGTACTCTTAGAGCTCCTCACAGGAAAGAAATCCGTGGACAAAAAACGACCTAGCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCTTTGTTGAAGGATTCCTACAAACTAGAGAGAATAATGGACCCAAGACTTGAGGATCAGTACTCACCTGAAGGGGCTAAAAGGTTTGCAGCCTTGGCTTACCAATGTTTGAGCCACCATGCGAAGGGTAGGCCCACCATGAGAACAGTGGTTCGGACCTTAGAGTCTCTCTTGAAACTGAAAGACATCCCAGTTGGTCCTTTTGTCTATGTGGTACCCAGTGAGGAAGACAAAGACATACCCAAAGTGAATGAAAAAGTAACAGAAAATGACCATGTTGTTCAGATCAACCAAATTGATGAGTTAAAACCCAAAGAAGAAGAAAAGGGAGAGAAAAAAGAAAAGGGTCACCACCGGCAACGAAAAAGTCGTCGCCACAAACGCCGTGTTAAGCCCTTGAGGTCTCAACCTGTTTACTCTGACACTACTCTGTACAAAACTCTTGGCACAAATCTATACTCTCCCAAACAAGCACCGTGA 1395 0.4294 MPSKRLQWRSLVLGCFKAKNQQTLEAPNIVSKKSSSSRIFLSDLSLSDYSSLSIMSDLSNSLVGSNLRIFTYQELKEITHSFSKSNILGEGGFGKVYKGFIDDSFKRGLKAQVVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEYRLLVYEYMERGNLEEKLFKGYVAALPWLTRIKIAIGAAKGLMFLHEEEIPVIYRDFKSSNILLDADYNAKLSDFGLAIDGPEKDQTHITTRVMGTQGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSYKLERIMDPRLEDQYSPEGAKRFAALAYQCLSHHAKGRPTMRTVVRTLESLLKLKDIPVGPFVYVVPSEEDKDIPKVNEKVTENDHVVQINQIDELKPKEEEKGEKKEKGHHRQRKSRRHKRRVKPLRSQPVYSDTTLYKTLGTNLYSPKQAP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00415 464 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Phco1g00415 464 CDD STKc_IRAK 88 362 - -
Phco1g00415 464 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Phco1g00415 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Phco1g00415 464 PANTHER OS01G0588500 PROTEIN-RELATED 38 362 - -
Phco1g00415 464 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Phco1g00415 464 Gene3D Transferase(Phosphotransferase) domain 1 165 368 - -
Phco1g00415 464 MobiDBLite consensus disorder prediction 420 438 - -
Phco1g00415 464 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00415 464 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 165 368 - -
Phco1g00415 464 MobiDBLite consensus disorder prediction 406 446 - -
Phco1g00415 464 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Phco1g00415 464 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00415 Phco-Chr1 3250657 3252614 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco1g00415 PK_Tyr_Ser-Thr 1.1e-45 CL0016