Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00409 ATGATCATGGAACCAAATCCAACATCAGATCATAGTCTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCACCATTCTTAGACGATCCATATAACTCTAGTGACATCCAAGAGTATCAGCTGTGGGATCAAGACATAAGCAGCCAGTATCAAACTGATGCTAATACCAGCTCCCCTAATGTCACCAACATTGATACTAGCATACCACCCCTGGAGCCTTGTGGCTCTAACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTTCCACTGATGATTCAAGTTTCAGACCACCTCAAAGCCACAAGCACAAGAAAATCAAGAGTAAACCAATGAATAATGAAGCAGATAGTGGAGACGCAGAAGGGACAACAACAGTTAGAAAACCTGGTGGGAACAAGAAAGGTGCTGCTAAGGGTGTAGCAAATAACTGCAACAACAAGGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGACCCGTGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCATCACCTACGGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTCACACACCACTTATCATCTTCTCTAGCATCTACCTCTTCTGGGTCCAATACTTTTGCATCTACTGAGCCACGGTTCTTCCAAAAAACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCGAACAACATAGCAAATGCTTCCATCCTTCAGGTTCTTGGGGAAGACAATGACAATTCACGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGCATGCAATGGCCAACATTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCCCCACTGGTTCGCCTCACTGTGGTCACTGCTTCTTCCACTGAAATTGACACCCCATTTTCTATTGGTCCTCCTGGTGACAACTTCCCATCTAGACTCCTTGGTTTTGCTCAGTTAATGAACGTTAATTTGCAGATTAAAAGGCTAGATAATTGTTCATTACATACACTGAGTGCTCAAAGTGTTGACACCTCCCCAGATGAAATCTTTGTTGTGTGTGCACAGTTTAGGCTGCATCAGTTAAGTCACAATACCACTGACGAAAAGAGTGAGTTTCTGAAAATGCTGAGAAACATGGAGCCCAAAGGGGTGATACTAAGTGACAACAACATGGAATGTTGTTGCAATTGTTGTGGGGATTTTGCCACCGGATTCTCTCGAAGGGTGGAGTACTTGTGGAGGTTTTTGGACTCAACAAGCTCAGCCTTCAAGGGTCGTGACAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCGGCAAAGGCATTGACAAACCAACGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAAGCCGGGTTTGTGGGAGAAGTACTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATAGTAATTGGGAGATGAAAGTCGAAGACGACAATAGAAGTGTAGGACTGTGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCCTTGTGGAAGCTGGACGGGAATGATCAGAGCTCAACATTCACATCATGA 1629 0.4518 MIMEPNPTSDHSLDWFEGSVSFFPLPPFLDDPYNSSDIQEYQLWDQDISSQYQTDANTSSPNVTNIDTSIPPLEPCGSNNLPLSDLPKKRSSTDDSSFRPPQSHKHKKIKSKPMNNEADSGDAEGTTTVRKPGGNKKGAAKGVANNCNNKEGRWAEQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASTSSGSNTFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPPGDNFPSRLLGFAQLMNVNLQIKRLDNCSLHTLSAQSVDTSPDEIFVVCAQFRLHQLSHNTTDEKSEFLKMLRNMEPKGVILSDNNMECCCNCCGDFATGFSRRVEYLWRFLDSTSSAFKGRDSDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDSNWEMKVEDDNRSVGLWWKGQPVSFCSLWKLDGNDQSSTFTS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00409 542 MobiDBLite consensus disorder prediction 52 142 - -
Phco1g00409 542 MobiDBLite consensus disorder prediction 52 75 - -
Phco1g00409 542 ProSiteProfiles GRAS family profile. 146 530 IPR005202 -
Phco1g00409 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 135 518 IPR005202 -
Phco1g00409 542 Pfam GRAS domain family 156 530 IPR005202 -
Phco1g00409 542 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00409 Phco-Chr1 3207847 3209475 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco1g00409 GRAS 1.9e-75 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00409 1 3207847 3209475 Phco1g00409 1 3207847 3209475 ECH
Phco1g00409 1 3207847 3209475 Phco10g01756 10 40084344 40085690 PCT