Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00404 ATGTTTCTCCAAATTGTCTTCCTCCTTTCCTTTCTCTTATCCACTTCCCATGCTACTGTTCAAGACTTCTGTGTGGCAGACCTCAAAAGTGCAGATGGCCCTGCAGGCTATCCCTGCGTGGCACCTGCCAAAGTTACTTCAGATGACTTTGTGTTTGCTGGCTTATCTGAAGCTGCAAATGTCACAAACATAATCAATGCTGCTGTGTCCCCAGCATTTGTTGGTCAATTTCCAGGTGTTAATGGTCTTGATCTCTCTGCAGCAAGGTTAGACCTTGGTCCTGCAGGAGTTATACCACTGCACACTCATCCTGGTGCCAATGAACTTCTAATAGTGACTCAGGGTCACATCCTCGCTGGATTTGTATCATCAAGTAACGTTGTTTATCAGAAGTTACTGAAAAGGGGAGAGCTTATGGTCTTCCCACAAGGATTGTTGCACTTTCAAATAGCATCTCACAAGAGGAAGGCCCTTGCTTTTGCTGTTTTCAGCAGTGCAAACCCTGGCCTCCAAATCCTTGACTTTGCACTGTTTGCCAGCAACTTCTCCACACCTTTGATCGCACAGACTACTTTCCTTGACCCTGACCTAGTCAAGAAGCTTAAGAGTGTTCTTGGGGGCAGTGGCTAA 630 0.4619 MFLQIVFLLSFLLSTSHATVQDFCVADLKSADGPAGYPCVAPAKVTSDDFVFAGLSEAANVTNIINAAVSPAFVGQFPGVNGLDLSAARLDLGPAGVIPLHTHPGANELLIVTQGHILAGFVSSSNVVYQKLLKRGELMVFPQGLLHFQIASHKRKALAFAVFSSANPGLQILDFALFASNFSTPLIAQTTFLDPDLVKKLKSVLGGSG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00404 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Phco1g00404 209 Pfam Cupin 54 195 IPR006045 -
Phco1g00404 209 SMART Cupin_1_3 53 199 IPR006045 -
Phco1g00404 209 Gene3D Jelly Rolls 16 208 IPR014710 -
Phco1g00404 209 CDD cupin_OxOx 16 205 IPR001929 GO:0030145
Phco1g00404 209 FunFam Auxin-binding protein ABP19a 17 208 - -
Phco1g00404 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 202 - -
Phco1g00404 209 SUPERFAMILY RmlC-like cupins 18 203 IPR011051 -
Phco1g00404 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Phco1g00404 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Phco1g00404 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00404 Phco-Chr1 3179282 3179911 Dispersed/Wgd