Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00402 ATGATGAGTGCAAGTGCAAGTGCCAGAAATAGGTCTCCTTTCACACCAACTCAGTGGCAAGAGCTTGAGCAACAAGCTCTTGTTTTCAAACACATGGTCACAGGAACACCTATCCCACCAGATCTCATCTACTCTATTAAAAGAAGTCTGGACTCTTCAATTTCTTCAAGACTCTTCCCACACCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACAAACACCTCCCAAACAATCCCATCTTATACCAGAAACCTTTCCTTGACAAATCCCACCATAACTTCACCCTCTTTCCCTTTCTCCCCTTTGCCCTCTTCTTTGTCCTGTGAGTCCCAACCCTTTTCCCAATCCTACCAAAACCCTTCTCTCAATCCCTTCTTCTACGCCCAATCAACCTCCTCTAGACCCCCAGATTCTGATTTTCCACCTCAAGATGCCACTACCCACCAGCTATTCATGGACTCTGGATCCTATTCTCATGATGAGAAGGATTATAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCAGGATCAGCGAGGAGCTATACTGACTCGTATCAGCAACTATCAATGAGCTCCTACAAGTCCTATTCAAATTCCAACTTTCAGAACATCAATGATGGCACCAACCCAAGACAGCAAGAGCAACAACACTGCTTTGTTTTGGGGACTGACTTCAAATCAACAAGGCCAATCAAAGAGAAAGAAGCCGAGACAACAAGCCAGAGACCACTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGGTAACAATGATCATGCTCTTCCCTACTCTCATAATCATACCCCTTTTAATATTCCACTTCATGCTTACCTATAA 1086 0.453 MMSASASARNRSPFTPTQWQELEQQALVFKHMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSYTRNLSLTNPTITSPSFPFSPLPSSLSCESQPFSQSYQNPSLNPFFYAQSTSSRPPDSDFPPQDATTHQLFMDSGSYSHDEKDYRHVHGIREDVDERAFFPEASGSARSYTDSYQQLSMSSYKSYSNSNFQNINDGTNPRQQEQQHCFVLGTDFKSTRPIKEKEAETTSQRPLHRFFGEWPPKNTDSWLDLASNSRIPTGNNDHALPYSHNHTPFNIPLHAYL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00402 361 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco1g00402 361 Pfam WRC 79 121 IPR014977 -
Phco1g00402 361 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Phco1g00402 361 MobiDBLite consensus disorder prediction 168 206 - -
Phco1g00402 361 MobiDBLite consensus disorder prediction 119 145 - -
Phco1g00402 361 PANTHER GROWTH-REGULATING FACTOR 5 12 327 IPR031137 GO:0005634|GO:0006351|GO:0032502
Phco1g00402 361 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco1g00402 361 MobiDBLite consensus disorder prediction 110 145 - -
Phco1g00402 361 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00402 Phco-Chr1 3163398 3164792 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Phco1g00402 WRC 2e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00402 1 3163398 3164792 Phco1g00402 1 3163398 3164792 ECH