Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00396 ATGGGAAGAAGTCCTTGTTGTTCTAAAGAAGGTTTGAACAAAGGAGCATGGACAGCTCTGGAAGATAAAATTCTGACAGAATACATTAACATCCATGGCGAAGGAAAATGGAGACACCTGCCCAAAAGAGCAGGTCTTAAGAGATGCGGGAAAAGTTGCAGACTGAGATGGTTGAATTATCTTAGGCCAGGCATTAAGAGAGGTAACATTACTAATGATGAAGAGGAGCTCATTATCAGGCTTCACAATCTTCTTGGTAACAGGTGGTCTTTGATTGCTGGAAGGCTTCCGGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGAAGGAAACTTCAAAATGGCACCCCAGGATGCTCCATTACAAATGGTGGTGCACGAAGCACTTTAAACACAGTTCAGCATGATGAAAACGTTAAGAACCAGGAATGGCACTACGATAAGGGTTCGTGTCTTGTTCAGACTAAAGCAACAAGGTGGACTAAGGTCACAGTCACTAACGAAATTAGTCAACACAATGAAAACAATAAGAGCAATGTTGGTGATCATAACAAAATGAAGGCATTTCTAGTGTCTCCGTCTTCAGAGAGTAACAATGATCCAGTGTTGAATTTCATGGAAAATCTTGAGATGGATGGCAATTTCTTCTCGGAGCTACTGAATATGGATTTGCCTGAATCATCTTGTCAAGGAAATAAGATACTTGAAGATAATGATAACCATTGTTCGGTTGATAAAGGGTATTTATCTCCAAAATCATCCAGTGATACCACCCACTTTCTTTGGGGTGATTCACTGTATGACCCAAATTTTGATTTTCTACCAGTGACAACTTTTATGGAGTCGGGATTTGATTGGCTATGA 876 0.4018 MGRSPCCSKEGLNKGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTPGCSITNGGARSTLNTVQHDENVKNQEWHYDKGSCLVQTKATRWTKVTVTNEISQHNENNKSNVGDHNKMKAFLVSPSSESNNDPVLNFMENLEMDGNFFSELLNMDLPESSCQGNKILEDNDNHCSVDKGYLSPKSSSDTTHFLWGDSLYDPNFDFLPVTTFMESGFDWL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00396 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco1g00396 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco1g00396 291 CDD SANT 16 61 IPR001005 -
Phco1g00396 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 189 - -
Phco1g00396 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco1g00396 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco1g00396 291 FunFam MYB-related transcription factor 13 66 - -
Phco1g00396 291 Gene3D - 14 66 - -
Phco1g00396 291 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Phco1g00396 291 CDD SANT 71 112 IPR001005 -
Phco1g00396 291 SMART sant 13 63 IPR001005 -
Phco1g00396 291 SMART sant 66 114 IPR001005 -
Phco1g00396 291 Gene3D - 70 147 - -
Phco1g00396 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco1g00396 291 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00396 Phco-Chr1 3117169 3118527 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g00396 Myb_DNA-binding 2.6e-13 CL0123