Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00395 ATGGGAAGACGACCCTGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAGTGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATCTCTGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACACCCTACATCATCATCATCTGTTTCTTCACTTCAACACAAACGTGGCGAAGAAGAGAAGATCAAGCAAGTGCATGTAACACCCGATGCTCCACGCCCTAGGAGAGTTAGTGCAGTTGAATACAGTAAAATTATGGAGAATGGTGGGTGTGGTGGTAATAGGTGTAGTACCACTGCCAGTCCCTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTCTTTTAGTGATTTCCTCATCGATATTGATCAAAACCAGTTGTTGATTGCTGATGATTCCAACTCCAAGGTCCCACAAACGGAGGAAGACCATAACAACAAACAGGTAGTCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGCCAGAGAAATTCGACCCTCTCGAGACCCTCTTGGATGTGGAACTCAAGAGGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 816 0.4387 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHPTSSSSVSSLQHKRGEEEKIKQVHVTPDAPRPRRVSAVEYSKIMENGGCGGNRCSTTASPSNKVEGSSDEASFSDFLIDIDQNQLLIADDSNSKVPQTEEDHNNKQVVLTNSPSSSSPSDHCHHLLPEKFDPLETLLDVELKRMASFLGLEND 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00395 271 CDD SANT 70 111 IPR001005 -
Phco1g00395 271 MobiDBLite consensus disorder prediction 114 128 - -
Phco1g00395 271 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Phco1g00395 271 Gene3D - 10 66 - -
Phco1g00395 271 SMART sant 12 62 IPR001005 -
Phco1g00395 271 SMART sant 65 113 IPR001005 -
Phco1g00395 271 MobiDBLite consensus disorder prediction 210 239 - -
Phco1g00395 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Phco1g00395 271 FunFam Transcription factor TT2 69 141 - -
Phco1g00395 271 MobiDBLite consensus disorder prediction 114 148 - -
Phco1g00395 271 CDD SANT 15 60 IPR001005 -
Phco1g00395 271 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Phco1g00395 271 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 209 - -
Phco1g00395 271 Gene3D - 69 142 - -
Phco1g00395 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Phco1g00395 271 MobiDBLite consensus disorder prediction 129 146 - -
Phco1g00395 271 FunFam MYB-related transcription factor 12 65 - -
Phco1g00395 271 MobiDBLite consensus disorder prediction 220 239 - -
Phco1g00395 271 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco1g00395 271 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Phco1g00395 271 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00395 Phco-Chr1 3101128 3102457 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco1g00395 Myb_DNA-binding 7e-16 CL0123