Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00390 ATGGTGTTAAAGCTGGGCCTGAAATATTTCTTCAATCTTCTCTTCTCAGACCTACACTTTTTTCTCTCTCTCTCTCTCTGGGTTTTCGACGACATCCGGAAAATAAAAATGGGTATCATTGAGAAGATCAAAGAAATTGAAGCCGAAATGGCTCGGACCCAGAAAAACAAAGCCACAGAGTATCATCTTGGGCAGCTCAAGGCGAAGATAGCAAAACTAAGGACACAATTATTGGAGCCTCCGAAAGGTTCTAGTGGAGGTGGAGAAGGATTTGAAGTTACAAAATTTGGCCATGGACGTGTTGCGCTGATTGGATTTCCAAGTGTGGGGAAGTCTACTCTTTTGACAATGTTAACGGGCACACACTCGGAAGCTGCATCTTATGAGTTCACAACTCTGACCTGTATTCCTGGGATTATACACTATAATGATACTAAAATTCAGTTACTTGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAGGGACGAGGGAGACAGGTTATTGCTGTTGCTAAATCTTCCGACATAGTGTTGATGGTTCTTGATGCTTCCAAAAGTGAGGGCCATAGGCAAATATTGACCAGAGAGCTGGAAGCTGTGGGCTTGCGGTTAAACAAGAGACCTCCTCAGATATACTTTAAAAAGAAAAAGACAGGGGGCATTTCATTTAACAGCACTTTGCCTTTGACTCATGTGGATGAGAAGCTTTGTTATCAGATCCTGCATGAGTACAAGATTCACAATGCAGAGGTCCTTTTCCGTGAGGATGCTACAGTGGATGATCTCATAGATGTCATTGAAGGAAACCGAAAATACATGAAGTGTGTGTATGTCTACAACAAGATAGATGTCATTGGTATTGATGATGTGGACAGATTAGCTCGTCAACCCAATTCTGTTGTCATTAGCTGCAATTTGAAGCTGAACTTAGACAGACTACTTGCAAGGATGTGGGACGAAATGGGTTTGGTTAGAATTTACACAAAACCACAAGGCCAGCAGCCTGATTTCTCTGATCCTGTGGTTCTTTCTGCTGATAGAGGAGGCTGCACTGTAGAAGATTTCTGCAACCATATTCACAGAAGTTTGGTGAAGGATGTCAAGTATGTTCTGGTCTGGGGCGCTAGTGCAAGGCACTACCCACAACATTGCGGTCTTAGTCATAATCTTCGTGACGAAGATGTGGTTCAAATTGTTAAGAAAAAGGAAAAGGAAGAGGGAGGAAGGGGAAGATTCAAATCACATTCCAATGCACCTGCTCGGATATCTGACAGAGAGAAGAAGGCACCACTGAAGACATAA 1308 0.4274 MVLKLGLKYFFNLLFSDLHFFLSLSLWVFDDIRKIKMGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGEGFEVTKFGHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVAKSSDIVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDRLARQPNSVVISCNLKLNLDRLLARMWDEMGLVRIYTKPQGQQPDFSDPVVLSADRGGCTVEDFCNHIHRSLVKDVKYVLVWGASARHYPQHCGLSHNLRDEDVVQIVKKKEKEEGGRGRFKSHSNAPARISDREKKAPLKT 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00390 435 CDD DRG 100 331 IPR045001 GO:0003924|GO:0005525
Phco1g00390 435 NCBIfam small GTP-binding protein domain 100 249 IPR005225 GO:0005525
Phco1g00390 435 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 37 429 IPR045001 GO:0003924|GO:0005525
Phco1g00390 435 FunFam Developmentally-regulated GTP-binding protein 103 224 - -
Phco1g00390 435 Gene3D - 33 127 - -
Phco1g00390 435 Gene3D - 168 273 - -
Phco1g00390 435 MobiDBLite consensus disorder prediction 404 435 - -
Phco1g00390 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 338 IPR027417 -
Phco1g00390 435 Pfam C-terminal region of MMR_HSR1 domain 220 325 IPR031662 -
Phco1g00390 435 Coils Coil 36 56 - -
Phco1g00390 435 Gene3D - 317 409 IPR012675 -
Phco1g00390 435 ProSiteProfiles TGS domain profile. 324 402 IPR004095 -
Phco1g00390 435 CDD TGS_DRG1 323 403 - -
Phco1g00390 435 PRINTS GTP1/OBG GTP-binding protein family signature 122 140 IPR006073 GO:0005525
Phco1g00390 435 PRINTS GTP1/OBG GTP-binding protein family signature 166 184 IPR006073 GO:0005525
Phco1g00390 435 PRINTS GTP1/OBG GTP-binding protein family signature 101 121 IPR006073 GO:0005525
Phco1g00390 435 PRINTS GTP1/OBG GTP-binding protein family signature 149 164 IPR006073 GO:0005525
Phco1g00390 435 FunFam Developmentally-regulated GTP-binding protein 1 317 404 - -
Phco1g00390 435 SUPERFAMILY TGS-like 320 402 IPR012676 -
Phco1g00390 435 Pfam TGS domain 326 402 IPR004095 -
Phco1g00390 435 ProSitePatterns GTP1/OBG family signature. 151 164 IPR006074 GO:0005525
Phco1g00390 435 Pfam 50S ribosome-binding GTPase 100 215 IPR006073 GO:0005525
Phco1g00390 435 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 99 324 IPR031167 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00390 Phco-Chr1 3044552 3049872 Dispersed