Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g00381 | ATGCCTATTTTCTACGAAGTAGATCCTTCAGACGTACGACATCAAAGGAGGACTTATGGAGATGCCTTTGTTAAACATGAAAGAAACTATTCCTCGACTACTGTGCAAAGCTGGAGATCTGCTTTGAGTGAATCTGCTAATCTATCAGGATTTTATTCATCAATTTTTCATGACACCCTTCAATCAAAGTACGATGTCTTTATTAGCTTTAGAGGTCCAGATGTTCGTGAAGGTTTCCTTAGCCATTTGATTGAGGCACTTTCTCTAAACCAGATTGCTTCCTTTGTAGATTACAACATTCCCAAAGGACATCAAATATCTGATGTACTTCTAAGAGCAATTGAATACAATCTGATCACAGTGCAAACCTGGAGAATTGCTTTGAAGGAGTCTGCTAATCTAGTAGGATTTGATTCATCTACTTTTCGGAATGATGCTAAGCTTGTTAAAGAGATTGTTAAATGTGTGTCGTCAATGGTGTTGAATATCAGACATAAAGTTAATTCTAAAGAGCAGTATGAAATTGAAGTCCCATACAGCTATGCTGCCACTGATGAAGGTTATGCAGAAGTTTTTAGTAGTTCTGAAGGGATTTGTGAGCATCAAGAGAGGTCTTTAAGGGAAAGGTTTTGGCAGTGCAAAAGCAAGGAAATGTGA | 657 | 0.3775 | MPIFYEVDPSDVRHQRRTYGDAFVKHERNYSSTTVQSWRSALSESANLSGFYSSIFHDTLQSKYDVFISFRGPDVREGFLSHLIEALSLNQIASFVDYNIPKGHQISDVLLRAIEYNLITVQTWRIALKESANLVGFDSSTFRNDAKLVKEIVKCVSSMVLNIRHKVNSKEQYEIEVPYSYAATDEGYAEVFSSSEGICEHQERSLRERFWQCKSKEM | 218 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g00381 | 218 | Pfam | TIR domain | 1 | 48 | IPR000157 | GO:0007165 | |
| Phco1g00381 | 218 | Pfam | TIR domain | 63 | 115 | IPR000157 | GO:0007165 | |
| Phco1g00381 | 218 | PANTHER | TMV RESISTANCE PROTEIN N-LIKE | 61 | 173 | - | - | |
| Phco1g00381 | 218 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 61 | 121 | IPR035897 | - | |
| Phco1g00381 | 218 | ProSiteProfiles | TIR domain profile. | 62 | 218 | IPR000157 | GO:0007165 | |
| Phco1g00381 | 218 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 1 | 51 | IPR035897 | - | |
| Phco1g00381 | 218 | Gene3D | - | 119 | 167 | IPR035897 | - | |
| Phco1g00381 | 218 | Gene3D | - | 1 | 60 | IPR035897 | - | |
| Phco1g00381 | 218 | Gene3D | - | 61 | 118 | IPR035897 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g00381 | Phco-Chr1 | 2966981 | 2968290 | Tandem |