Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00367 ATGAAGAACTTAATTGAGAAAGGCTCTGGTTCTACCCATTTAACAGCTCCTTATGCTCTTGGATGCACATCATGGGGGACTTCCTCTGAATCTAATGTTCAACAATCATCCATGTCCAGAAGTTTGACCTTGAAAATGAGTGTTCTGCCGCAACAATGCCACAAGACTAAGCCATTGAATTTTCAATACCAAGACCGAGATTCATCTTCATCTCAATCAACTGGTCAGTCTTATCAGGAAGTTGGTTCAGCGCAATCAGGTCAAATTTCAGTCCAGTGTAGCAATTCTTCTGCTTGTTCAACACTTAACACAACTGGGAGAAAGAGTGTGGAAGGTGTCATCAGGTCTGTTGTGCGGGGTCAGGATTTTACCTTCCCTCCTTCACAACTGTGTCACAACCAACCACTTGCTCATACTGCTTTCCACCTTGTTGAGCCGTGCTTTAGTGGCCTACTAGCTTCTCCATATGGGCCACAAGCTAACATTCATCCTGCTCAACTGATAGGAATGGCTACTGCTAGAATTCCTCTGCCACTTGATCTTAGTGAGGAGCCTATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCAGGCAATACCGTGCAAAACTTGAAGCGCAGAACAAACTCATCAAAGAAAGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCAATGAAGAGAGCTAGAGGTTCTGGTGGTCGCTTCTTGAATACCAAAAAGGTTGAAGAGTCTAAACTCACTTCAGCTAACCATGCTGTAGATGTTTCAAGCTGTACTCGATTGAATCTGAGGGGAAACATGTCAGAATCTAGGAGGGTGGTTCTAGTGGAGAAGTTGAACTACAGAGATGGTACTTCCACAACCACCTGTTCCGATATTACTACTGCATCTAATAGTGGTGATCTCTTCCAGCAACATCAGTCAGAATTTAGATTATGTGGTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCTTCTGATATTGGTGGTGGTGGTGGAAACCAACACCGTTTATCAGTCCTTATGTGA 1047 0.4374 MKNLIEKGSGSTHLTAPYALGCTSWGTSSESNVQQSSMSRSLTLKMSVLPQQCHKTKPLNFQYQDRDSSSSQSTGQSYQEVGSAQSGQISVQCSNSSACSTLNTTGRKSVEGVIRSVVRGQDFTFPPSQLCHNQPLAHTAFHLVEPCFSGLLASPYGPQANIHPAQLIGMATARIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHAMKRARGSGGRFLNTKKVEESKLTSANHAVDVSSCTRLNLRGNMSESRRVVLVEKLNYRDGTSTTTCSDITTASNSGDLFQQHQSEFRLCGYPSHIGRNMQGYSSDIGGGGGNQHRLSVLM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00367 348 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Phco1g00367 348 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Phco1g00367 348 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Phco1g00367 348 Gene3D - 182 243 - -
Phco1g00367 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
Phco1g00367 348 MobiDBLite consensus disorder prediction 60 81 - -
Phco1g00367 348 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
Phco1g00367 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 304 IPR001289 GO:0003700|GO:0006355
Phco1g00367 348 ProSitePatterns NF-YA/HAP2 subunit signature. 187 207 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00367 Phco-Chr1 2819072 2821910 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco1g00367 CBFB_NFYA 3.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00367 1 2819072 2821910 Phco1g00367 1 2819072 2821910 ECH