Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00366 ATGGACTCGCGCACGTATAATCCACGCACTGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGGAGAGCTGCTCTCATCAAAGCCCTTACCACTGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATCTCTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCTGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATAGCATTCTATTTTGGAGCCAGATTCGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAACATGATCAATGAACTGCCAACAATATTTGAAGTCGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAACCTTCTGTTTCAAACCACAGTGGCAGCAAGTCCAAGTCCAGCTCTAAGCAACGGGCTCCGGAGTCTCAGAGTAGACAGTCAAAGCCATTGCAACCAAAAGAAGAGGATGAAGAACTGGACGAACAAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACTCCAGCTAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 759 0.4559 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKPSVSNHSGSKSKSSSKQRAPESQSRQSKPLQPKEEDEELDEQDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00366 252 MobiDBLite consensus disorder prediction 144 190 - -
Phco1g00366 252 FunFam PHD finger alfin-like protein 191 247 - -
Phco1g00366 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Phco1g00366 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Phco1g00366 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Phco1g00366 252 SMART PHD_3 198 246 IPR001965 -
Phco1g00366 252 Pfam PHD-finger 199 248 IPR019787 -
Phco1g00366 252 CDD PHD_AL_plant 198 248 IPR044104 -
Phco1g00366 252 PANTHER CPG BINDING PROTEIN 7 251 IPR045104 GO:0006355|GO:0042393
Phco1g00366 252 MobiDBLite consensus disorder prediction 149 174 - -
Phco1g00366 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Phco1g00366 252 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00366 Phco-Chr1 2806827 2810775 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phco1g00366 Alfin 8.2e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00366 1 2806827 2810775 Phco10g01776 10 40202093 40206560 ECH
Phco7g00614 7 4650800 4657816 Phco1g00366 1 2806827 2810775 ECH
Phco1g00366 1 2806827 2810775 Phco1g00366 1 2806827 2810775 ECH
Phco10g01776 10 40202093 40206560 Phco1g00366 1 2806827 2810775 PCT