Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00354 ATGTTTGCCACCCAAGCTCCATCAACATCCCTTGTGGTCGGAAAAGACTCCACCGTGATCGCAGTTAGTGGAGGTCGACATAGCAATGGTGCTGTCAAATGGGCTGTGGAACACCTCCTAAAGAAGAACTCCTCATGCATCCTTCTTCATGTTCGAACTAGGACCATGCTTACTCCTGAAATTAGTGATGTACCAAAAAATGGTCGTCCACCTACTGAAGAAGAATTGCACCAATTCTTTCTTCCCTTTAGAGGATTTTGTGCCAGAAAAGGGATCACCACAAAGGAATTGGTCTTGCACGATCTTGATGTTTCAAATGCACTTCTTGCTTTCGTTGTTGAAAATTGTATAAGCACCCTTGTTGTTGGTGCTGCTACTTCTTCTTGGAGTTCTATTTTAAGGAGATTTAATAAAGATGATGTGTCAGCTAGTTTAGCAAAATTTTTACCAGATACTTGCAGTTTATATGTTACATCAAAAGGAAAAGTACAACATATTAGACCATCAGGTCATCATGCTCATCATCATCGTCAACAACATGTTGAAGCCACACCAACTAAATCTTTAAAAGACATAGTCAATCTTTTGGAAAATGATCCATTGGTTCATCCACATAAGAATCCCACTAATAACCAAGTAGCTTTTGAAGATATAGAGAGGAAACTAAGCAAAGATACAATTAAGCAACAGTCTAATAAACTTTGGGAATATTTAAATGAAATTAAAGATGCCACGCTCACAATACAATATAAGTCCAATGAAGATATCAATTCACCAAAAGGTCCAATTGAGTATCCCCCATCACAAAGTTCATCTACCAACAATTCCCCTGGAAATAGTGATAGTACAGGGCAATCACTTGGTCTTCCTTTGACTAATACCTTAAATCCTAAGAACATTTCTTCTGTAAAAGAACAAGTAAACTTTGATATGCAAATGAGGAAATTGAGATTAGAACTAGAAAAAACCACGGAGAAGTATGGTATGGCTTGCAAAGAAGCTGTTCTAGCCACACAAAAGGCAATGGAGCTTGAAAAGTTTAGACTAGAAAAGGAGCGTGATATAGAGGAAGTAAAACTTGCTCAAGAGTCTGCATTGGCTTTGGCAGAGGCAGAGAGACAAAAAACTAAATTGGCTATAGAGTCAGCAGAAATGTCAAAACACCTAGCAAGAATGGAGACTCAGAAGAGAAAGGAAATTGAATTAAAAGTCAAACACGAGGAAGAAGAGGCTATTAAAGCATTGCATGAAGTTATATATAATAATATTCCTTATAGAAGATACACAATTGAAGATATTGAAGTTGCAACAAATAAATTCGACAATACTTTGAAAATTGGTGAAGGTGGATATGGACCTGTCTTTAAAGGAGTGCTTGATCACACTGTTGTTGCTATTAAGGCCATGAGACCAGATATAAACTATGCAGAAAAACAATTTCAACAAGAGGTCATTGTTTTAAGCACCATAAGACATCCAAACATGGTGCTTCTCTTAGGAGCATGTCCAGAATTTGGTTGCCTTGTATATGATTACATGGTAAATGGAAGCTTGGAAGATCGTCTCTTCCAAAAAGATAACACTCCTCCAATTCCATGGAAAACACGTTTCAAAATAGCATCTGAGATTGCCACTGGCCTTCTTTTTCTTCATCAAACAAAGCCCGAACCCCTGGTGCATCGAGACTTGAAACCAGCAAACATTCTTTTAGACAAGAACTACGTGAGCAAGATCAGTGATGTTGGTTTGGCACGACTTGTTCCTCCTTCAGTGGCTAACAAAACCACACAATATCGTCTAACTGGTGCAGCTGGAACATTTTGTTACATCGACCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACATATATTCATTAGGAGTGGTGTTGCTACAAATCATTACAGGAAAACCTCCAATGGGCTTGTCACACTTGGTTGAGAAAGCTCTTTTGTCAAATACTTTAAGTGAGGTGCTTGATCAAAGTGTTACTGATTGGCCAATGGAAGAGACTTCATCGTTTGCTAAGTTGGCCTTAAAGTGTTGTGAGTTGAGAAAACGTGATAGACCAGATCTTGGTACCATTGTCTTACCTGAATTAAATAGAATATGGAGTTTATGGGATGATGAGAACAAACATCCCCTTTCTAATTACATGGTTTGA 2172 0.3821 MFATQAPSTSLVVGKDSTVIAVSGGRHSNGAVKWAVEHLLKKNSSCILLHVRTRTMLTPEISDVPKNGRPPTEEELHQFFLPFRGFCARKGITTKELVLHDLDVSNALLAFVVENCISTLVVGAATSSWSSILRRFNKDDVSASLAKFLPDTCSLYVTSKGKVQHIRPSGHHAHHHRQQHVEATPTKSLKDIVNLLENDPLVHPHKNPTNNQVAFEDIERKLSKDTIKQQSNKLWEYLNEIKDATLTIQYKSNEDINSPKGPIEYPPSQSSSTNNSPGNSDSTGQSLGLPLTNTLNPKNISSVKEQVNFDMQMRKLRLELEKTTEKYGMACKEAVLATQKAMELEKFRLEKERDIEEVKLAQESALALAEAERQKTKLAIESAEMSKHLARMETQKRKEIELKVKHEEEEAIKALHEVIYNNIPYRRYTIEDIEVATNKFDNTLKIGEGGYGPVFKGVLDHTVVAIKAMRPDINYAEKQFQQEVIVLSTIRHPNMVLLLGACPEFGCLVYDYMVNGSLEDRLFQKDNTPPIPWKTRFKIASEIATGLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSVANKTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITGKPPMGLSHLVEKALLSNTLSEVLDQSVTDWPMEETSSFAKLALKCCELRKRDRPDLGTIVLPELNRIWSLWDDENKHPLSNYMV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00354 723 MobiDBLite consensus disorder prediction 253 298 - -
Phco1g00354 723 Gene3D HUPs 17 144 IPR014729 -
Phco1g00354 723 Pfam Protein tyrosine and serine/threonine kinase 445 699 IPR001245 GO:0004672|GO:0006468
Phco1g00354 723 Gene3D Phosphorylase Kinase; domain 1 418 512 - -
Phco1g00354 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Phco1g00354 723 SUPERFAMILY Protein kinase-like (PK-like) 419 699 IPR011009 -
Phco1g00354 723 MobiDBLite consensus disorder prediction 263 298 - -
Phco1g00354 723 SMART serkin_6 440 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00354 723 Gene3D Transferase(Phosphotransferase) domain 1 513 715 - -
Phco1g00354 723 Coils Coil 389 417 - -
Phco1g00354 723 CDD STK_N 17 161 - -
Phco1g00354 723 ProSiteProfiles Protein kinase domain profile. 440 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00354 723 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 413 512 - -
Phco1g00354 723 Coils Coil 366 386 - -
Phco1g00354 723 FunFam Os07g0541700 protein 513 603 - -
Phco1g00354 723 PANTHER OS02G0152300 PROTEIN 19 706 - -
Phco1g00354 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00354 Phco-Chr1 2677661 2681595 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phco1g00354 PK_Tyr_Ser-Thr 4e-39 CL0016